Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06670

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
1,281,117	+				+1.0
1,281,117	+				-0.9
1,281,131	+				+1.2
1,281,172	+				-1.0
1,281,172	+				+5.2
1,281,172	+				+2.1
1,281,275	+		LU632_RS06665	0.25	+0.3
1,281,514	+		LU632_RS06665	0.83	+0.5
1,281,518	+		LU632_RS06665	0.84	-2.6
1,281,518	+		LU632_RS06665	0.84	+3.5
1,281,519	-		LU632_RS06665	0.84	-2.8
1,281,719	-				+0.1
1,281,719	-				-0.6
1,281,725	+				-2.6
1,281,725	+				-2.4
1,281,741	-				+1.4
1,281,781	+				+0.2
1,281,781	+				-1.9
1,281,782	-				-0.1
1,281,782	-				+0.8
1,281,782	-				-0.6
1,281,880	+		LU632_RS06670	0.18	-1.4
1,281,892	+		LU632_RS06670	0.20	-1.3
1,281,893	-		LU632_RS06670	0.20	-1.6
1,281,893	-		LU632_RS06670	0.20	-2.3
1,281,942	-		LU632_RS06670	0.27	-0.1
1,281,968	-		LU632_RS06670	0.31	-0.9
1,282,027	+		LU632_RS06670	0.40	-0.1
1,282,028	-		LU632_RS06670	0.40	-0.2
1,282,028	-		LU632_RS06670	0.40	-2.5
1,282,135	+		LU632_RS06670	0.55	+0.5
1,282,267	+		LU632_RS06670	0.74	-0.5
1,282,267	+		LU632_RS06670	0.74	+1.0
1,282,268	-		LU632_RS06670	0.74	-1.6
1,282,268	-		LU632_RS06670	0.74	-2.6
1,282,268	-		LU632_RS06670	0.74	-0.1
1,282,302	+		LU632_RS06670	0.79	+1.2
1,282,319	-		LU632_RS06670	0.82	-1.2
1,282,401	+				-0.9
1,282,401	+				-0.4
1,282,438	-				-3.3
1,282,461	+				+0.5
1,282,462	-				-1.1
1,282,476	-				+1.2
1,282,556	-				+0.8
1,282,561	+				+0.3
1,282,744	+				+1.3
1,282,747	+				-0.9
1,282,747	+				+2.2
1,282,747	+				-1.4
1,282,747	+				-0.5
1,282,748	-				-1.8
1,282,748	-				+0.8
1,282,748	-				+0.6
1,282,749	+				-2.2
1,282,749	+				+1.2
1,282,749	+				-2.2
1,282,750	-				+0.2
1,282,750	-				+1.2
1,282,848	-				-0.4
1,282,866	+				-0.3
1,282,867	-				-2.4
1,282,867	-				-0.4
1,282,963	-				-0.5
1,283,044	+				-2.1