Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04935

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
961,644	+		LU632_RS04930	0.72	+0.5
961,645	-		LU632_RS04930	0.72	+1.6
961,645	-		LU632_RS04930	0.72	+0.1
961,648	+		LU632_RS04930	0.72	-1.6
961,648	+		LU632_RS04930	0.72	-1.2
961,649	-		LU632_RS04930	0.72	+0.1
961,678	-		LU632_RS04930	0.77	+1.1
961,683	-		LU632_RS04930	0.77	+1.2
961,683	-		LU632_RS04930	0.77	-1.1
961,740	+		LU632_RS04930	0.85	-0.4
961,741	-		LU632_RS04930	0.86	+3.2
961,741	-		LU632_RS04930	0.86	-1.2
961,827	+				-1.0
961,828	-				-0.3
961,905	+				-2.9
961,906	-				-0.6
961,906	-				-1.4
961,933	+				-1.5
962,058	-				-0.4
962,058	-				+0.6
962,123	+				-0.1
962,147	+				+1.0
962,147	+				-0.5
962,239	+				-0.6
962,240	-				-0.2
962,382	+				-0.4
962,383	-				-0.9
962,383	-				-1.3
962,431	+				-0.7
962,540	-	traD	LU632_RS04935	0.14	+0.5
962,581	-	traD	LU632_RS04935	0.17	-0.8
962,598	+	traD	LU632_RS04935	0.18	-0.4
962,598	+	traD	LU632_RS04935	0.18	+2.8
962,599	-	traD	LU632_RS04935	0.18	+0.5
962,622	+	traD	LU632_RS04935	0.20	+0.4
962,623	-	traD	LU632_RS04935	0.20	-0.4
962,623	-	traD	LU632_RS04935	0.20	+1.5
962,750	-	traD	LU632_RS04935	0.29	+1.5
962,753	+	traD	LU632_RS04935	0.29	+0.0
962,753	+	traD	LU632_RS04935	0.29	-0.1
962,754	-	traD	LU632_RS04935	0.29	-0.8
962,754	-	traD	LU632_RS04935	0.29	-0.7
962,754	-	traD	LU632_RS04935	0.29	+0.5
962,754	-	traD	LU632_RS04935	0.29	+0.6
962,754	-	traD	LU632_RS04935	0.29	+2.7
962,802	+	traD	LU632_RS04935	0.33	-0.1
962,803	-	traD	LU632_RS04935	0.33	-0.4
962,803	-	traD	LU632_RS04935	0.33	-1.3
962,854	-	traD	LU632_RS04935	0.37	-1.2
962,938	-	traD	LU632_RS04935	0.43	-0.8
962,983	+	traD	LU632_RS04935	0.46	+0.2
962,984	-	traD	LU632_RS04935	0.46	+0.8
963,006	+	traD	LU632_RS04935	0.47	-0.1
963,006	+	traD	LU632_RS04935	0.47	-0.1
963,007	-	traD	LU632_RS04935	0.48	-2.2
963,007	-	traD	LU632_RS04935	0.48	-1.0
963,007	-	traD	LU632_RS04935	0.48	+1.7
963,007	-	traD	LU632_RS04935	0.48	+1.4
963,007	-	traD	LU632_RS04935	0.48	-0.0
963,007	-	traD	LU632_RS04935	0.48	+1.1
963,007	-	traD	LU632_RS04935	0.48	-0.1
963,007	-	traD	LU632_RS04935	0.48	-0.8
963,007	-	traD	LU632_RS04935	0.48	+0.4
963,007	-	traD	LU632_RS04935	0.48	+1.6
963,099	+	traD	LU632_RS04935	0.54	+2.2
963,100	-	traD	LU632_RS04935	0.54	+1.2
963,337	+	traD	LU632_RS04935	0.71	+0.3
963,338	-	traD	LU632_RS04935	0.71	-0.5
963,342	+	traD	LU632_RS04935	0.72	-1.2
963,343	-	traD	LU632_RS04935	0.72	-0.7
963,404	+	traD	LU632_RS04935	0.76	+1.2
963,749	+				+0.4
963,750	-				+0.5
963,752	+				-1.5
963,752	+				-0.9
963,753	-				+0.5
963,753	-				+0.0
963,753	-				+0.3
963,795	+				-1.8
963,798	-				+1.4
963,798	-				+0.2
963,798	-				+0.2
963,884	-		LU632_RS04940	0.20	-0.4
964,008	-		LU632_RS04940	0.36	+0.6
964,022	-		LU632_RS04940	0.38	-0.1
964,026	+		LU632_RS04940	0.39	+0.2
964,055	+		LU632_RS04940	0.43	+1.3
964,066	+		LU632_RS04940	0.44	-0.7
964,153	+		LU632_RS04940	0.55	+0.5
964,153	+		LU632_RS04940	0.55	+2.0
964,153	+		LU632_RS04940	0.55	-0.9
964,154	-		LU632_RS04940	0.56	-1.2
964,154	-		LU632_RS04940	0.56	-0.7
964,162	-		LU632_RS04940	0.57	+1.2
964,162	-		LU632_RS04940	0.57	+0.1
964,183	+		LU632_RS04940	0.59	+1.6
964,184	-		LU632_RS04940	0.60	+0.1
964,337	+		LU632_RS04940	0.80	-0.3
964,364	-		LU632_RS04940	0.83	+0.5
964,380	+		LU632_RS04940	0.85	+0.1
964,451	+				-1.9
964,489	-				-0.0
964,489	-				-0.7
964,514	-				-1.5
964,563	+				+3.2
964,671	-		LU632_RS04945	0.36	-0.5