Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04880

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS04870 and LU632_RS04875 are separated by 176 nucleotidesLU632_RS04875 and LU632_RS04880 are separated by 13 nucleotidesLU632_RS04880 and LU632_RS04885 are separated by 54 nucleotidesLU632_RS04885 and LU632_RS04890 are separated by 650 nucleotides LU632_RS04870: LU632_RS04870 - STY4528 family pathogenicity island replication protein, at 951,529 to 952,767 _RS04870 LU632_RS04875: LU632_RS04875 - TIGR03761 family integrating conjugative element protein, at 952,944 to 953,699 _RS04875 LU632_RS04880: LU632_RS04880 - DNA topoisomerase III, at 953,713 to 955,435 _RS04880 LU632_RS04885: LU632_RS04885 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 955,490 to 955,759 _RS04885 LU632_RS04890: LU632_RS04890 - STY4534 family ICE replication protein, at 956,410 to 956,874 _RS04890 Position (kb) 953 954 955 956Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 952.724 kb on - strandat 952.755 kb on + strandat 952.755 kb on + strandat 952.755 kb on + strandat 952.755 kb on + strandat 952.755 kb on + strandat 952.756 kb on - strandat 952.756 kb on - strandat 952.756 kb on - strandat 952.820 kb on - strandat 952.824 kb on - strandat 952.940 kb on - strandat 952.940 kb on - strandat 952.941 kb on + strandat 952.941 kb on + strandat 952.941 kb on + strandat 952.941 kb on + strandat 952.942 kb on - strandat 952.942 kb on - strandat 952.942 kb on - strandat 952.942 kb on - strandat 952.942 kb on - strandat 952.942 kb on - strandat 952.943 kb on + strandat 953.043 kb on - strand, within LU632_RS04875at 953.049 kb on + strand, within LU632_RS04875at 953.090 kb on + strand, within LU632_RS04875at 953.136 kb on - strand, within LU632_RS04875at 953.136 kb on - strand, within LU632_RS04875at 953.189 kb on + strand, within LU632_RS04875at 953.205 kb on - strand, within LU632_RS04875at 953.259 kb on - strand, within LU632_RS04875at 953.259 kb on - strand, within LU632_RS04875at 953.443 kb on - strand, within LU632_RS04875at 953.476 kb on - strand, within LU632_RS04875at 953.512 kb on - strand, within LU632_RS04875at 953.529 kb on + strand, within LU632_RS04875at 953.530 kb on - strand, within LU632_RS04875at 953.530 kb on - strand, within LU632_RS04875at 953.532 kb on + strand, within LU632_RS04875at 953.532 kb on + strand, within LU632_RS04875at 953.533 kb on - strand, within LU632_RS04875at 953.533 kb on - strand, within LU632_RS04875at 953.622 kb on - strand, within LU632_RS04875at 953.722 kb on + strandat 953.722 kb on + strandat 953.754 kb on + strandat 953.754 kb on + strandat 953.796 kb on + strandat 953.867 kb on - strandat 953.884 kb on - strandat 953.923 kb on - strand, within LU632_RS04880at 953.976 kb on + strand, within LU632_RS04880at 953.977 kb on - strand, within LU632_RS04880at 953.977 kb on - strand, within LU632_RS04880at 953.977 kb on - strand, within LU632_RS04880at 954.062 kb on - strand, within LU632_RS04880at 954.083 kb on + strand, within LU632_RS04880at 954.083 kb on + strand, within LU632_RS04880at 954.084 kb on - strand, within LU632_RS04880at 954.159 kb on + strand, within LU632_RS04880at 954.172 kb on + strand, within LU632_RS04880at 954.173 kb on - strand, within LU632_RS04880at 954.236 kb on - strand, within LU632_RS04880at 954.541 kb on - strand, within LU632_RS04880at 954.644 kb on + strand, within LU632_RS04880at 954.644 kb on + strand, within LU632_RS04880at 954.644 kb on + strand, within LU632_RS04880at 954.645 kb on - strand, within LU632_RS04880at 954.646 kb on + strand, within LU632_RS04880at 954.646 kb on + strand, within LU632_RS04880at 954.646 kb on + strand, within LU632_RS04880at 954.691 kb on + strand, within LU632_RS04880at 954.728 kb on + strand, within LU632_RS04880at 954.844 kb on - strand, within LU632_RS04880at 954.901 kb on + strand, within LU632_RS04880at 954.909 kb on + strand, within LU632_RS04880at 954.922 kb on + strand, within LU632_RS04880at 954.976 kb on - strand, within LU632_RS04880at 955.040 kb on + strand, within LU632_RS04880at 955.041 kb on - strand, within LU632_RS04880at 955.078 kb on - strand, within LU632_RS04880at 955.134 kb on + strand, within LU632_RS04880at 955.134 kb on + strand, within LU632_RS04880at 955.134 kb on + strand, within LU632_RS04880at 955.135 kb on - strand, within LU632_RS04880at 955.135 kb on - strand, within LU632_RS04880at 955.358 kb on - strandat 955.457 kb on - strandat 955.483 kb on + strandat 955.588 kb on + strand, within LU632_RS04885at 955.589 kb on - strand, within LU632_RS04885at 955.639 kb on + strand, within LU632_RS04885at 955.639 kb on + strand, within LU632_RS04885at 955.639 kb on + strand, within LU632_RS04885at 955.639 kb on + strand, within LU632_RS04885at 955.639 kb on + strand, within LU632_RS04885at 955.639 kb on + strand, within LU632_RS04885at 955.640 kb on - strand, within LU632_RS04885at 955.657 kb on + strand, within LU632_RS04885at 955.771 kb on - strandat 955.783 kb on + strandat 955.784 kb on - strandat 955.784 kb on - strandat 955.798 kb on + strandat 955.995 kb on - strandat 956.108 kb on + strandat 956.108 kb on + strandat 956.207 kb on - strandat 956.219 kb on - strandat 956.219 kb on - strandat 956.265 kb on + strandat 956.319 kb on + strandat 956.378 kb on + strandat 956.379 kb on - strandat 956.383 kb on + strandat 956.390 kb on - strandat 956.424 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
remove
952,724 - -0.4
952,755 + +0.9
952,755 + -2.1
952,755 + -0.0
952,755 + -0.6
952,755 + -0.7
952,756 - +1.4
952,756 - -0.2
952,756 - +1.4
952,820 - -0.7
952,824 - -2.9
952,940 - -2.6
952,940 - -1.9
952,941 + -1.1
952,941 + -0.2
952,941 + +0.2
952,941 + +2.7
952,942 - +0.2
952,942 - -0.2
952,942 - +0.3
952,942 - +1.4
952,942 - -0.1
952,942 - +1.3
952,943 + +2.4
953,043 - LU632_RS04875 0.13 -0.4
953,049 + LU632_RS04875 0.14 +1.2
953,090 + LU632_RS04875 0.19 +1.0
953,136 - LU632_RS04875 0.25 +0.1
953,136 - LU632_RS04875 0.25 -0.2
953,189 + LU632_RS04875 0.32 -0.1
953,205 - LU632_RS04875 0.35 +0.6
953,259 - LU632_RS04875 0.42 -0.1
953,259 - LU632_RS04875 0.42 -1.4
953,443 - LU632_RS04875 0.66 +1.3
953,476 - LU632_RS04875 0.70 -1.4
953,512 - LU632_RS04875 0.75 -1.8
953,529 + LU632_RS04875 0.77 -1.9
953,530 - LU632_RS04875 0.78 +0.5
953,530 - LU632_RS04875 0.78 +0.6
953,532 + LU632_RS04875 0.78 -2.1
953,532 + LU632_RS04875 0.78 +1.3
953,533 - LU632_RS04875 0.78 +0.7
953,533 - LU632_RS04875 0.78 +0.2
953,622 - LU632_RS04875 0.90 -1.7
953,722 + +0.5
953,722 + -1.9
953,754 + -3.2
953,754 + -2.8
953,796 + +1.6
953,867 - -0.4
953,884 - +0.6
953,923 - LU632_RS04880 0.12 -0.4
953,976 + LU632_RS04880 0.15 -0.4
953,977 - LU632_RS04880 0.15 -0.5
953,977 - LU632_RS04880 0.15 -2.1
953,977 - LU632_RS04880 0.15 +0.1
954,062 - LU632_RS04880 0.20 +0.1
954,083 + LU632_RS04880 0.21 -0.2
954,083 + LU632_RS04880 0.21 +2.2
954,084 - LU632_RS04880 0.22 -3.6
954,159 + LU632_RS04880 0.26 +0.4
954,172 + LU632_RS04880 0.27 +2.2
954,173 - LU632_RS04880 0.27 -0.3
954,236 - LU632_RS04880 0.30 -0.2
954,541 - LU632_RS04880 0.48 -1.7
954,644 + LU632_RS04880 0.54 +2.6
954,644 + LU632_RS04880 0.54 +0.2
954,644 + LU632_RS04880 0.54 +0.2
954,645 - LU632_RS04880 0.54 -1.0
954,646 + LU632_RS04880 0.54 -0.7
954,646 + LU632_RS04880 0.54 +1.8
954,646 + LU632_RS04880 0.54 +1.3
954,691 + LU632_RS04880 0.57 +0.6
954,728 + LU632_RS04880 0.59 -1.8
954,844 - LU632_RS04880 0.66 -1.0
954,901 + LU632_RS04880 0.69 -0.8
954,909 + LU632_RS04880 0.69 -1.0
954,922 + LU632_RS04880 0.70 +0.5
954,976 - LU632_RS04880 0.73 +1.6
955,040 + LU632_RS04880 0.77 -0.6
955,041 - LU632_RS04880 0.77 +1.0
955,078 - LU632_RS04880 0.79 -0.9
955,134 + LU632_RS04880 0.82 -0.4
955,134 + LU632_RS04880 0.82 +0.4
955,134 + LU632_RS04880 0.82 -1.4
955,135 - LU632_RS04880 0.83 -0.4
955,135 - LU632_RS04880 0.83 +0.5
955,358 - -0.5
955,457 - -0.9
955,483 + -1.7
955,588 + LU632_RS04885 0.36 +2.2
955,589 - LU632_RS04885 0.37 -1.4
955,639 + LU632_RS04885 0.55 +0.8
955,639 + LU632_RS04885 0.55 -0.8
955,639 + LU632_RS04885 0.55 -0.1
955,639 + LU632_RS04885 0.55 +0.2
955,639 + LU632_RS04885 0.55 +1.3
955,639 + LU632_RS04885 0.55 +0.6
955,640 - LU632_RS04885 0.56 -0.9
955,657 + LU632_RS04885 0.62 +0.2
955,771 - -0.8
955,783 + +0.6
955,784 - -0.6
955,784 - -2.1
955,798 + -0.4
955,995 - -0.2
956,108 + -0.4
956,108 + -0.7
956,207 - -1.6
956,219 - -0.5
956,219 - +0.9
956,265 + -0.7
956,319 + -0.1
956,378 + +0.9
956,379 - +0.0
956,383 + +2.1
956,390 - -0.4
956,424 + -0.3

Or see this region's nucleotide sequence