Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ispH and LU632_RS02700 are separated by 80 nucleotides LU632_RS02700 and LU632_RS02705 are separated by 60 nucleotides LU632_RS02705 and djlA are separated by 179 nucleotides
LU632_RS02695: ispH - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 541,581 to 542,534
ispH
LU632_RS02700: LU632_RS02700 - IS5 family transposase, at 542,615 to 543,440
_RS02700
LU632_RS02705: LU632_RS02705 - IS6 family transposase, at 543,501 to 543,963
_RS02705
LU632_RS02710: djlA - co-chaperone DjlA, at 544,143 to 544,964
djlA
Position (kb) 542
543
544 Strain fitness (log2 ratio) -2
-1
0
1 at 542.546 kb on + strand at 542.552 kb on - strand at 542.620 kb on + strand at 543.471 kb on + strand at 543.471 kb on + strand at 543.473 kb on + strand at 543.473 kb on + strand at 543.473 kb on + strand at 543.501 kb on + strand at 543.501 kb on + strand at 543.503 kb on + strand at 544.047 kb on - strand at 544.047 kb on - strand at 544.049 kb on - strand at 544.054 kb on - strand at 544.129 kb on - strand at 544.145 kb on - strand at 544.148 kb on + strand at 544.149 kb on - strand at 544.149 kb on - strand at 544.191 kb on - strand at 544.276 kb on - strand, within djlA at 544.400 kb on - strand, within djlA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2) remove 542,546 + -2.6 542,552 - -2.3 542,620 + -1.2 543,471 + -0.5 543,471 + +0.2 543,473 + +0.9 543,473 + +1.1 543,473 + -0.2 543,501 + -0.8 543,501 + +0.6 543,503 + +1.0 544,047 - -2.6 544,047 - +0.2 544,049 - -1.4 544,054 - -2.0 544,129 - +0.3 544,145 - +0.1 544,148 + -0.2 544,149 - -0.3 544,149 - -0.8 544,191 - -1.8 544,276 - djlA LU632_RS02710 0.16 +0.0 544,400 - djlA LU632_RS02710 0.31 -1.2
Or see this region's nucleotide sequence