Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01975 and LU632_RS01980 are separated by 82 nucleotides LU632_RS01980 and LU632_RS01985 are separated by 18 nucleotides
LU632_RS01975: LU632_RS01975 - fimbrial biogenesis outer membrane usher protein, at 378,030 to 380,648
_RS01975
LU632_RS01980: LU632_RS01980 - fimbrial protein, at 380,731 to 381,633
_RS01980
LU632_RS01985: LU632_RS01985 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 381,652 to 383,394
_RS01985
Position (kb) 380
381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 379.760 kb on + strand, within LU632_RS01975 at 379.804 kb on + strand, within LU632_RS01975 at 379.870 kb on - strand, within LU632_RS01975 at 379.973 kb on + strand, within LU632_RS01975 at 380.646 kb on + strand at 380.669 kb on + strand at 380.972 kb on + strand, within LU632_RS01980 at 380.973 kb on - strand, within LU632_RS01980 at 381.134 kb on + strand, within LU632_RS01980 at 381.232 kb on - strand, within LU632_RS01980 at 381.269 kb on - strand, within LU632_RS01980 at 381.322 kb on - strand, within LU632_RS01980 at 381.375 kb on + strand, within LU632_RS01980 at 381.439 kb on - strand, within LU632_RS01980 at 381.957 kb on + strand, within LU632_RS01985 at 381.969 kb on + strand, within LU632_RS01985 at 382.122 kb on + strand, within LU632_RS01985 at 382.325 kb on - strand, within LU632_RS01985 at 382.413 kb on + strand, within LU632_RS01985 at 382.459 kb on + strand, within LU632_RS01985 at 382.463 kb on - strand, within LU632_RS01985
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2) remove 379,760 + LU632_RS01975 0.66 -0.3 379,804 + LU632_RS01975 0.68 +0.3 379,870 - LU632_RS01975 0.70 +2.5 379,973 + LU632_RS01975 0.74 -0.3 380,646 + +1.6 380,669 + +0.9 380,972 + LU632_RS01980 0.27 -1.0 380,973 - LU632_RS01980 0.27 -3.3 381,134 + LU632_RS01980 0.45 +0.2 381,232 - LU632_RS01980 0.55 -2.6 381,269 - LU632_RS01980 0.60 +1.0 381,322 - LU632_RS01980 0.65 +0.1 381,375 + LU632_RS01980 0.71 -1.1 381,439 - LU632_RS01980 0.78 -0.0 381,957 + LU632_RS01985 0.17 +0.5 381,969 + LU632_RS01985 0.18 +0.1 382,122 + LU632_RS01985 0.27 -0.4 382,325 - LU632_RS01985 0.39 +2.3 382,413 + LU632_RS01985 0.44 +0.1 382,459 + LU632_RS01985 0.46 +1.8 382,463 - LU632_RS01985 0.47 +2.3
Or see this region's nucleotide sequence