Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt epmA and mscM are separated by 45 nucleotides mscM and asd are separated by 10 nucleotides
LU632_RS01930: epmA - elongation factor P--(R)-beta-lysine ligase, at 367,813 to 368,790
epmA
LU632_RS01935: mscM - miniconductance mechanosensitive channel MscM, at 368,836 to 372,171
mscM
LU632_RS01940: asd - archaetidylserine decarboxylase, at 372,182 to 373,081
asd
Position (kb) 368
369
370
371
372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 368.855 kb on + strand at 368.983 kb on + strand at 368.983 kb on + strand at 368.983 kb on + strand at 368.983 kb on + strand at 368.983 kb on + strand at 368.984 kb on - strand at 368.984 kb on - strand at 368.984 kb on - strand at 368.985 kb on + strand at 368.985 kb on + strand at 368.986 kb on - strand at 368.986 kb on - strand at 369.091 kb on + strand at 369.091 kb on + strand at 369.091 kb on + strand at 369.219 kb on + strand, within mscM at 369.237 kb on + strand, within mscM at 369.291 kb on + strand, within mscM at 369.292 kb on - strand, within mscM at 369.292 kb on - strand, within mscM at 369.339 kb on + strand, within mscM at 369.477 kb on + strand, within mscM at 369.477 kb on + strand, within mscM at 369.481 kb on + strand, within mscM at 369.482 kb on - strand, within mscM at 369.524 kb on + strand, within mscM at 369.524 kb on + strand, within mscM at 369.570 kb on + strand, within mscM at 369.571 kb on - strand, within mscM at 369.609 kb on + strand, within mscM at 369.630 kb on + strand, within mscM at 369.636 kb on + strand, within mscM at 369.647 kb on - strand, within mscM at 369.655 kb on + strand, within mscM at 369.655 kb on + strand, within mscM at 369.673 kb on - strand, within mscM at 369.856 kb on + strand, within mscM at 369.870 kb on + strand, within mscM at 370.008 kb on + strand, within mscM at 370.009 kb on - strand, within mscM at 370.041 kb on + strand, within mscM at 370.041 kb on + strand, within mscM at 370.098 kb on + strand, within mscM at 370.099 kb on - strand, within mscM at 370.153 kb on - strand, within mscM at 370.161 kb on + strand, within mscM at 370.361 kb on + strand, within mscM at 370.452 kb on + strand, within mscM at 370.452 kb on + strand, within mscM at 370.708 kb on + strand, within mscM at 371.011 kb on - strand, within mscM at 371.148 kb on + strand, within mscM at 371.148 kb on + strand, within mscM at 371.148 kb on + strand, within mscM at 371.148 kb on + strand, within mscM at 371.152 kb on - strand, within mscM at 371.152 kb on - strand, within mscM at 371.166 kb on + strand, within mscM at 371.215 kb on + strand, within mscM at 371.344 kb on - strand, within mscM at 371.485 kb on + strand, within mscM at 371.772 kb on + strand, within mscM at 371.773 kb on - strand, within mscM at 371.773 kb on - strand, within mscM at 371.941 kb on - strand at 371.950 kb on + strand at 371.951 kb on - strand at 372.054 kb on + strand at 373.115 kb on - strand at 373.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2) remove 368,855 + -0.6 368,983 + +0.4 368,983 + -0.9 368,983 + +0.6 368,983 + -0.2 368,983 + -1.8 368,984 - -1.0 368,984 - -2.3 368,984 - +0.2 368,985 + -2.3 368,985 + -0.2 368,986 - -0.4 368,986 - -1.9 369,091 + +1.9 369,091 + -0.8 369,091 + +0.8 369,219 + mscM LU632_RS01935 0.11 +1.9 369,237 + mscM LU632_RS01935 0.12 -2.2 369,291 + mscM LU632_RS01935 0.14 -0.7 369,292 - mscM LU632_RS01935 0.14 -3.2 369,292 - mscM LU632_RS01935 0.14 -0.2 369,339 + mscM LU632_RS01935 0.15 +2.8 369,477 + mscM LU632_RS01935 0.19 -0.0 369,477 + mscM LU632_RS01935 0.19 -0.2 369,481 + mscM LU632_RS01935 0.19 -0.6 369,482 - mscM LU632_RS01935 0.19 +0.5 369,524 + mscM LU632_RS01935 0.21 +0.1 369,524 + mscM LU632_RS01935 0.21 -0.3 369,570 + mscM LU632_RS01935 0.22 -0.9 369,571 - mscM LU632_RS01935 0.22 -0.6 369,609 + mscM LU632_RS01935 0.23 -0.1 369,630 + mscM LU632_RS01935 0.24 -1.2 369,636 + mscM LU632_RS01935 0.24 +0.4 369,647 - mscM LU632_RS01935 0.24 -1.9 369,655 + mscM LU632_RS01935 0.25 -0.6 369,655 + mscM LU632_RS01935 0.25 -0.9 369,673 - mscM LU632_RS01935 0.25 +0.2 369,856 + mscM LU632_RS01935 0.31 +1.6 369,870 + mscM LU632_RS01935 0.31 +1.4 370,008 + mscM LU632_RS01935 0.35 +2.2 370,009 - mscM LU632_RS01935 0.35 -1.1 370,041 + mscM LU632_RS01935 0.36 -2.9 370,041 + mscM LU632_RS01935 0.36 -1.2 370,098 + mscM LU632_RS01935 0.38 -2.4 370,099 - mscM LU632_RS01935 0.38 +0.8 370,153 - mscM LU632_RS01935 0.39 -1.8 370,161 + mscM LU632_RS01935 0.40 -0.3 370,361 + mscM LU632_RS01935 0.46 +0.8 370,452 + mscM LU632_RS01935 0.48 -0.8 370,452 + mscM LU632_RS01935 0.48 -1.0 370,708 + mscM LU632_RS01935 0.56 -2.3 371,011 - mscM LU632_RS01935 0.65 +0.9 371,148 + mscM LU632_RS01935 0.69 +0.5 371,148 + mscM LU632_RS01935 0.69 -0.8 371,148 + mscM LU632_RS01935 0.69 -2.2 371,148 + mscM LU632_RS01935 0.69 -0.3 371,152 - mscM LU632_RS01935 0.69 -0.8 371,152 - mscM LU632_RS01935 0.69 +0.2 371,166 + mscM LU632_RS01935 0.70 -1.8 371,215 + mscM LU632_RS01935 0.71 +1.0 371,344 - mscM LU632_RS01935 0.75 +3.0 371,485 + mscM LU632_RS01935 0.79 -0.4 371,772 + mscM LU632_RS01935 0.88 -1.2 371,773 - mscM LU632_RS01935 0.88 -2.4 371,773 - mscM LU632_RS01935 0.88 -1.0 371,941 - -1.6 371,950 + +4.6 371,951 - +0.5 372,054 + -3.1 373,115 - -0.0 373,129 - -2.9
Or see this region's nucleotide sequence