Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00840

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00835 and zinT are separated by 76 nucleotideszinT and LU632_RS00845 are separated by 181 nucleotides LU632_RS00835: LU632_RS00835 - DeoR/GlpR family DNA-binding transcription regulator, at 181,888 to 182,664 _RS00835 LU632_RS00840: zinT - metal-binding protein ZinT, at 182,741 to 183,388 zinT LU632_RS00845: LU632_RS00845 - ABC transporter ATP-binding protein/permease, at 183,570 to 185,403 _RS00845 Position (kb) 182 183 184Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 181.824 kb on + strandat 181.844 kb on + strandat 181.955 kb on + strandat 181.956 kb on - strandat 182.012 kb on + strand, within LU632_RS00835at 182.054 kb on + strand, within LU632_RS00835at 182.055 kb on - strand, within LU632_RS00835at 182.081 kb on - strand, within LU632_RS00835at 182.095 kb on + strand, within LU632_RS00835at 182.095 kb on + strand, within LU632_RS00835at 182.095 kb on + strand, within LU632_RS00835at 182.096 kb on - strand, within LU632_RS00835at 182.096 kb on - strand, within LU632_RS00835at 182.116 kb on - strand, within LU632_RS00835at 182.250 kb on - strand, within LU632_RS00835at 182.322 kb on + strand, within LU632_RS00835at 182.322 kb on + strand, within LU632_RS00835at 182.322 kb on + strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.339 kb on - strand, within LU632_RS00835at 182.339 kb on - strand, within LU632_RS00835at 182.339 kb on - strand, within LU632_RS00835at 182.367 kb on + strand, within LU632_RS00835at 182.417 kb on + strand, within LU632_RS00835at 182.448 kb on + strand, within LU632_RS00835at 182.493 kb on + strand, within LU632_RS00835at 182.565 kb on + strand, within LU632_RS00835at 182.577 kb on + strand, within LU632_RS00835at 182.577 kb on + strand, within LU632_RS00835at 182.617 kb on + strandat 182.692 kb on + strandat 182.692 kb on + strandat 182.910 kb on + strand, within zinTat 182.911 kb on - strand, within zinTat 182.979 kb on + strand, within zinTat 182.979 kb on - strand, within zinTat 182.980 kb on - strand, within zinTat 183.003 kb on + strand, within zinTat 183.004 kb on - strand, within zinTat 183.004 kb on - strand, within zinTat 183.010 kb on - strand, within zinTat 183.068 kb on - strand, within zinTat 183.074 kb on - strand, within zinTat 183.102 kb on + strand, within zinTat 183.102 kb on + strand, within zinTat 183.106 kb on - strand, within zinTat 183.182 kb on + strand, within zinTat 183.183 kb on - strand, within zinTat 183.187 kb on - strand, within zinTat 183.193 kb on + strand, within zinTat 183.449 kb on + strandat 183.451 kb on + strandat 183.452 kb on - strandat 183.504 kb on + strandat 183.637 kb on - strandat 183.656 kb on - strandat 183.665 kb on - strandat 183.698 kb on + strandat 183.698 kb on + strandat 183.728 kb on + strandat 183.729 kb on - strandat 183.729 kb on - strandat 183.734 kb on + strandat 183.774 kb on - strand, within LU632_RS00845at 183.938 kb on + strand, within LU632_RS00845at 183.939 kb on - strand, within LU632_RS00845at 183.942 kb on + strand, within LU632_RS00845at 183.942 kb on + strand, within LU632_RS00845at 183.942 kb on + strand, within LU632_RS00845at 183.942 kb on + strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 184.078 kb on - strand, within LU632_RS00845at 184.086 kb on - strand, within LU632_RS00845at 184.093 kb on + strand, within LU632_RS00845at 184.094 kb on - strand, within LU632_RS00845at 184.094 kb on - strand, within LU632_RS00845at 184.180 kb on + strand, within LU632_RS00845at 184.181 kb on - strand, within LU632_RS00845at 184.189 kb on + strand, within LU632_RS00845at 184.309 kb on - strand, within LU632_RS00845

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
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181,824 + +0.8
181,844 + -1.8
181,955 + -1.9
181,956 - -1.7
182,012 + LU632_RS00835 0.16 +0.3
182,054 + LU632_RS00835 0.21 -0.7
182,055 - LU632_RS00835 0.21 +1.5
182,081 - LU632_RS00835 0.25 -0.5
182,095 + LU632_RS00835 0.27 +0.8
182,095 + LU632_RS00835 0.27 +1.0
182,095 + LU632_RS00835 0.27 +2.8
182,096 - LU632_RS00835 0.27 +0.2
182,096 - LU632_RS00835 0.27 +0.2
182,116 - LU632_RS00835 0.29 -2.3
182,250 - LU632_RS00835 0.47 +1.0
182,322 + LU632_RS00835 0.56 +3.1
182,322 + LU632_RS00835 0.56 +0.5
182,322 + LU632_RS00835 0.56 +0.6
182,323 - LU632_RS00835 0.56 +4.9
182,323 - LU632_RS00835 0.56 +0.0
182,323 - LU632_RS00835 0.56 +3.6
182,323 - LU632_RS00835 0.56 -2.0
182,339 - LU632_RS00835 0.58 +1.9
182,339 - LU632_RS00835 0.58 +0.2
182,339 - LU632_RS00835 0.58 +2.1
182,367 + LU632_RS00835 0.62 +1.2
182,417 + LU632_RS00835 0.68 +1.9
182,448 + LU632_RS00835 0.72 -1.0
182,493 + LU632_RS00835 0.78 +2.7
182,565 + LU632_RS00835 0.87 -2.5
182,577 + LU632_RS00835 0.89 -1.9
182,577 + LU632_RS00835 0.89 +0.7
182,617 + +0.6
182,692 + -0.9
182,692 + -0.7
182,910 + zinT LU632_RS00840 0.26 -1.3
182,911 - zinT LU632_RS00840 0.26 -2.1
182,979 + zinT LU632_RS00840 0.37 -0.2
182,979 - zinT LU632_RS00840 0.37 -0.4
182,980 - zinT LU632_RS00840 0.37 -1.6
183,003 + zinT LU632_RS00840 0.40 -0.4
183,004 - zinT LU632_RS00840 0.41 -0.8
183,004 - zinT LU632_RS00840 0.41 -1.3
183,010 - zinT LU632_RS00840 0.42 -1.9
183,068 - zinT LU632_RS00840 0.50 +1.3
183,074 - zinT LU632_RS00840 0.51 +0.2
183,102 + zinT LU632_RS00840 0.56 -0.2
183,102 + zinT LU632_RS00840 0.56 -1.2
183,106 - zinT LU632_RS00840 0.56 +2.6
183,182 + zinT LU632_RS00840 0.68 -2.1
183,183 - zinT LU632_RS00840 0.68 -0.1
183,187 - zinT LU632_RS00840 0.69 -1.1
183,193 + zinT LU632_RS00840 0.70 -0.5
183,449 + +1.6
183,451 + +0.0
183,452 - -0.3
183,504 + -2.4
183,637 - +0.2
183,656 - +0.4
183,665 - +0.6
183,698 + -2.5
183,698 + +0.3
183,728 + +0.2
183,729 - -1.2
183,729 - -0.4
183,734 + -2.6
183,774 - LU632_RS00845 0.11 -0.0
183,938 + LU632_RS00845 0.20 -0.2
183,939 - LU632_RS00845 0.20 +0.2
183,942 + LU632_RS00845 0.20 +0.2
183,942 + LU632_RS00845 0.20 +1.0
183,942 + LU632_RS00845 0.20 +1.9
183,942 + LU632_RS00845 0.20 -0.8
183,943 - LU632_RS00845 0.20 +0.3
183,943 - LU632_RS00845 0.20 -0.3
183,943 - LU632_RS00845 0.20 -0.9
183,943 - LU632_RS00845 0.20 -0.2
183,943 - LU632_RS00845 0.20 +0.8
184,078 - LU632_RS00845 0.28 -2.1
184,086 - LU632_RS00845 0.28 +0.2
184,093 + LU632_RS00845 0.29 +0.7
184,094 - LU632_RS00845 0.29 +3.6
184,094 - LU632_RS00845 0.29 +3.2
184,180 + LU632_RS00845 0.33 -1.4
184,181 - LU632_RS00845 0.33 +0.5
184,189 + LU632_RS00845 0.34 +0.6
184,309 - LU632_RS00845 0.40 -0.4

Or see this region's nucleotide sequence