Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00510

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
103,541	+		LU632_RS00505	0.78	-1.2
103,695	-				-1.8
103,695	-				-0.1
103,789	+				-2.0
103,814	-				+0.7
103,840	-				-0.9
104,062	+	sicA	LU632_RS00510	0.27	-0.5
104,213	+	sicA	LU632_RS00510	0.55	+0.7
104,308	-	sicA	LU632_RS00510	0.72	+0.0
104,353	+	sicA	LU632_RS00510	0.81	+0.3
104,636	+				-1.3
104,829	+	sctE	LU632_RS00515	0.19	-0.9
104,980	+	sctE	LU632_RS00515	0.27	-0.3
105,002	-	sctE	LU632_RS00515	0.28	+0.0
105,116	-	sctE	LU632_RS00515	0.35	+0.4
105,217	-	sctE	LU632_RS00515	0.40	-0.8
105,220	+	sctE	LU632_RS00515	0.40	+0.2
105,335	+	sctE	LU632_RS00515	0.46	-1.4
105,336	-	sctE	LU632_RS00515	0.46	-0.7
105,339	+	sctE	LU632_RS00515	0.46	-2.3
105,381	+	sctE	LU632_RS00515	0.49	-1.3