Strain Fitness in Escherichia coli ECOR38 around HEPCGN_27070

Experiment: RB23

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntltrA and tnp-IS3 are separated by 128 nucleotidestnp-IS3 and HEPCGN_27080 overlap by 8 nucleotidesHEPCGN_27080 and HEPCGN_27085 are separated by 41 nucleotides HEPCGN_27070: ltrA - group II intron reverse transcriptase/maturase, at 4,156,516 to 4,158,039 ltrA HEPCGN_27075: tnp-IS3 - IS3 family transposase, at 4,158,168 to 4,158,608 tnp-IS3 HEPCGN_27080: HEPCGN_27080 - DNA packaging protein from bacteriophage origin, at 4,158,601 to 4,158,924 _27080 HEPCGN_27085: HEPCGN_27085 - Major capsid protein, at 4,158,966 to 4,159,991 _27085 Position (kb) 4156 4157 4158 4159Strain fitness (log2 ratio) -1 0 1 2at 4158.602 kb on + strandat 4158.602 kb on + strandat 4158.613 kb on + strandat 4158.721 kb on + strand, within HEPCGN_27080at 4158.721 kb on + strand, within HEPCGN_27080at 4158.722 kb on - strand, within HEPCGN_27080at 4158.968 kb on - strandat 4158.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB23
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4,158,602 + +0.4
4,158,602 + -0.7
4,158,613 + +0.6
4,158,721 + HEPCGN_27080 0.37 -0.7
4,158,721 + HEPCGN_27080 0.37 -0.6
4,158,722 - HEPCGN_27080 0.37 +1.8
4,158,968 - +0.9
4,158,979 - -1.4

Or see this region's nucleotide sequence