Strain Fitness in Escherichia coli ECOR38 around HEPCGN_24620

Experiment: RB23

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntltrA and HEPCGN_24620 are separated by 591 nucleotidesHEPCGN_24620 and tnp-IS629 overlap by 1 nucleotidestnp-IS629 and pdeG are separated by 404 nucleotides HEPCGN_24615: ltrA - group II intron reverse transcriptase/maturase, at 3,678,067 to 3,679,590 ltrA HEPCGN_24620: HEPCGN_24620 - HTH-21 domain-containing protein, at 3,680,182 to 3,680,661 _24620 HEPCGN_24625: tnp-IS629 - IS3 family IS629 transposase, at 3,680,661 to 3,680,987 tnp-IS629 HEPCGN_24630: pdeG - putative cyclic di-GMP phosphodiesterase PdeG, at 3,681,392 to 3,682,915 pdeG Position (kb) 3680 3681Strain fitness (log2 ratio) -1 0 1at 3681.073 kb on + strandat 3681.078 kb on + strandat 3681.078 kb on + strandat 3681.092 kb on - strandat 3681.138 kb on + strandat 3681.141 kb on + strandat 3681.142 kb on - strandat 3681.142 kb on - strandat 3681.327 kb on + strandat 3681.364 kb on + strandat 3681.367 kb on + strandat 3681.368 kb on - strandat 3681.401 kb on - strandat 3681.409 kb on - strandat 3681.491 kb on + strandat 3681.492 kb on - strandat 3681.524 kb on - strandat 3681.532 kb on + strandat 3681.533 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB23
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3,681,073 + +0.8
3,681,078 + +0.5
3,681,078 + +0.1
3,681,092 - -0.1
3,681,138 + -0.6
3,681,141 + -0.7
3,681,142 - -0.1
3,681,142 - -0.0
3,681,327 + +0.5
3,681,364 + +0.8
3,681,367 + +1.1
3,681,368 - -1.0
3,681,401 - +0.6
3,681,409 - +0.4
3,681,491 + +0.1
3,681,492 - +0.7
3,681,524 - -0.5
3,681,532 + +0.2
3,681,533 - +0.1

Or see this region's nucleotide sequence