Strain Fitness in Escherichia coli ECOR38 around HEPCGN_22475

Experiment: RB23

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RB23
3,267,108	+	apbE	HEPCGN_22470	0.17	-0.3
3,267,221	+	apbE	HEPCGN_22470	0.28	-0.7
3,267,293	+	apbE	HEPCGN_22470	0.35	-1.2
3,267,399	-	apbE	HEPCGN_22470	0.45	-1.3
3,267,462	-	apbE	HEPCGN_22470	0.51	-1.4
3,267,463	+	apbE	HEPCGN_22470	0.51	+3.2
3,267,706	+	apbE	HEPCGN_22470	0.74	+1.1
3,267,706	+	apbE	HEPCGN_22470	0.74	+0.2
3,267,775	-	apbE	HEPCGN_22470	0.80	-1.0
3,267,898	+				-2.0
3,267,899	-				+0.6
3,267,899	-				-1.4
3,267,901	-				-2.7
3,267,921	+				-1.9
3,267,928	-				-0.8
3,267,951	+				-0.1
3,267,964	-				-0.5
3,268,026	-				-0.2
3,268,026	-				-0.2
3,268,038	+				-0.5
3,268,074	+				-0.2
3,268,075	-				+0.6
3,268,075	-				-1.4
3,268,217	+	ada	HEPCGN_22475	0.15	-1.5
3,268,218	-	ada	HEPCGN_22475	0.15	-0.4
3,268,369	-	ada	HEPCGN_22475	0.29	-0.1
3,268,507	+	ada	HEPCGN_22475	0.42	-1.5
3,268,508	-	ada	HEPCGN_22475	0.43	-0.2
3,268,513	+	ada	HEPCGN_22475	0.43	+0.1
3,268,514	-	ada	HEPCGN_22475	0.43	-0.9
3,268,514	-	ada	HEPCGN_22475	0.43	-0.2
3,268,514	-	ada	HEPCGN_22475	0.43	+0.6
3,268,514	-	ada	HEPCGN_22475	0.43	+1.5
3,268,547	+	ada	HEPCGN_22475	0.46	-0.2
3,268,720	-	ada	HEPCGN_22475	0.62	+1.1
3,268,720	-	ada	HEPCGN_22475	0.62	-1.8
3,268,899	+	ada	HEPCGN_22475	0.79	+0.4
3,269,010	+	ada	HEPCGN_22475	0.90	-1.7
3,269,011	-	ada	HEPCGN_22475	0.90	-1.4
3,269,199	+	alkB	HEPCGN_22480	0.12	-1.3
3,269,227	-	alkB	HEPCGN_22480	0.17	-1.0
3,269,283	+	alkB	HEPCGN_22480	0.25	-0.9
3,269,283	+	alkB	HEPCGN_22480	0.25	-0.7
3,269,283	+	alkB	HEPCGN_22480	0.25	+2.2
3,269,283	+	alkB	HEPCGN_22480	0.25	-0.2
3,269,283	+	alkB	HEPCGN_22480	0.25	+1.4
3,269,283	+	alkB	HEPCGN_22480	0.25	+0.2
3,269,283	+	alkB	HEPCGN_22480	0.25	+1.7
3,269,284	-	alkB	HEPCGN_22480	0.25	+0.0
3,269,284	-	alkB	HEPCGN_22480	0.25	-1.2
3,269,482	+	alkB	HEPCGN_22480	0.56	+0.0
3,269,732	-				-0.3
3,269,821	+				-0.3
3,269,890	-				-0.6
3,269,950	-				-0.8
3,270,014	+	yojI	HEPCGN_22485	0.10	+0.8
3,270,015	-	yojI	HEPCGN_22485	0.10	+1.5
3,270,015	-	yojI	HEPCGN_22485	0.10	+1.5