Strain Fitness in Escherichia coli ECOR38 around HEPCGN_14820

Experiment: RB23

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RB23
1,722,126	-				+0.1
1,722,145	-	baxL	HEPCGN_14810	0.22	+0.8
1,722,206	+				+1.5
1,722,206	+				+0.8
1,722,207	-				+1.1
1,722,207	-				+1.2
1,722,211	+				+2.1
1,722,283	+	bax	HEPCGN_14815	0.14	+1.0
1,722,299	+	bax	HEPCGN_14815	0.16	-0.4
1,722,308	-	bax	HEPCGN_14815	0.17	-0.4
1,722,308	-	bax	HEPCGN_14815	0.17	-0.4
1,722,324	+	bax	HEPCGN_14815	0.19	-0.5
1,722,325	-	bax	HEPCGN_14815	0.19	+0.2
1,722,347	+	bax	HEPCGN_14815	0.22	+0.5
1,722,348	-	bax	HEPCGN_14815	0.22	+0.2
1,722,416	-	bax	HEPCGN_14815	0.30	-0.2
1,722,423	+	bax	HEPCGN_14815	0.31	-0.2
1,722,428	+	bax	HEPCGN_14815	0.32	-0.3
1,722,429	-	bax	HEPCGN_14815	0.32	+0.7
1,722,723	-	bax	HEPCGN_14815	0.68	+0.2
1,722,725	+	bax	HEPCGN_14815	0.68	+0.1
1,722,725	+	bax	HEPCGN_14815	0.68	-0.3
1,722,725	+	bax	HEPCGN_14815	0.68	-1.9
1,722,761	+	bax	HEPCGN_14815	0.72	+0.3
1,722,762	-	bax	HEPCGN_14815	0.72	+0.1
1,722,790	-	bax	HEPCGN_14815	0.76	+0.1
1,722,794	+	bax	HEPCGN_14815	0.76	-0.8
1,722,795	-	bax	HEPCGN_14815	0.76	+0.6
1,722,795	-	bax	HEPCGN_14815	0.76	+0.2
1,722,819	+	bax	HEPCGN_14815	0.79	+0.1
1,722,820	-	bax	HEPCGN_14815	0.79	+0.3
1,722,833	+	bax	HEPCGN_14815	0.81	+0.5
1,722,928	-				-0.1
1,722,930	-				+0.4
1,722,936	+				-0.9
1,722,936	+				+0.0
1,722,937	-				+0.1
1,722,983	+				+0.3
1,722,983	+				+0.1
1,722,984	-				-0.2
1,722,987	+				-1.3
1,722,987	+				+0.2
1,722,987	+				-1.8
1,722,988	-				-0.3
1,722,988	-				-0.2
1,722,988	-				-0.6
1,722,988	-				-0.1
1,723,098	+				-0.7
1,723,098	+				-0.2
1,723,099	-				-0.9
1,723,119	-				+1.1
1,723,170	+				-0.3
1,723,356	-	xylR	HEPCGN_14820	0.22	-0.4
1,723,398	+	xylR	HEPCGN_14820	0.26	+0.1
1,723,399	-	xylR	HEPCGN_14820	0.26	-0.1
1,723,399	-	xylR	HEPCGN_14820	0.26	+0.9
1,723,510	+	xylR	HEPCGN_14820	0.35	-0.1
1,723,514	+	xylR	HEPCGN_14820	0.35	+0.3
1,723,515	-	xylR	HEPCGN_14820	0.35	-1.8
1,723,515	-	xylR	HEPCGN_14820	0.35	-0.4
1,723,515	-	xylR	HEPCGN_14820	0.35	-0.7
1,723,546	-	xylR	HEPCGN_14820	0.38	+0.0
1,723,661	+	xylR	HEPCGN_14820	0.48	-0.3
1,723,673	+	xylR	HEPCGN_14820	0.49	-0.7
1,723,673	+	xylR	HEPCGN_14820	0.49	+0.0
1,723,685	-	xylR	HEPCGN_14820	0.50	-0.2
1,723,714	+	xylR	HEPCGN_14820	0.52	+0.5
1,723,807	-	xylR	HEPCGN_14820	0.60	-0.5
1,723,807	-	xylR	HEPCGN_14820	0.60	-0.3
1,723,903	-	xylR	HEPCGN_14820	0.68	-0.6
1,723,934	+	xylR	HEPCGN_14820	0.71	-1.1
1,723,935	-	xylR	HEPCGN_14820	0.71	-0.1
1,723,965	+	xylR	HEPCGN_14820	0.74	+0.7
1,723,965	+	xylR	HEPCGN_14820	0.74	-0.9
1,723,965	+	xylR	HEPCGN_14820	0.74	-0.0
1,723,965	+	xylR	HEPCGN_14820	0.74	-0.2
1,723,966	-	xylR	HEPCGN_14820	0.74	-1.2
1,723,966	-	xylR	HEPCGN_14820	0.74	-0.2
1,723,966	-	xylR	HEPCGN_14820	0.74	-0.5
1,723,966	-	xylR	HEPCGN_14820	0.74	-0.1
1,723,966	-	xylR	HEPCGN_14820	0.74	+0.1
1,723,966	-	xylR	HEPCGN_14820	0.74	-1.9
1,723,966	-	xylR	HEPCGN_14820	0.74	+1.4
1,723,983	+	xylR	HEPCGN_14820	0.75	+0.9
1,723,983	+	xylR	HEPCGN_14820	0.75	-2.2
1,723,984	-	xylR	HEPCGN_14820	0.75	+0.1
1,724,186	+				-0.2
1,724,190	+				-0.4
1,724,208	-				-0.3
1,724,208	-				+0.1
1,724,210	+				+0.0
1,724,223	+				+0.0
1,724,223	+				-0.4
1,724,224	-				-0.5
1,724,269	+				-0.4
1,724,319	+				-0.1
1,724,319	+				+0.1
1,724,386	+				-0.3
1,724,418	+				-0.8
1,724,419	-				-0.1
1,724,419	-				+0.2
1,724,420	+				+0.6
1,724,420	+				+0.4
1,724,420	+				-0.2
1,724,421	-				-0.6
1,724,421	-				-1.6
1,724,421	-				-0.9
1,724,448	+				-2.4
1,724,449	-				+0.4
1,724,449	-				+0.7
1,724,653	-	xylH	HEPCGN_14825	0.25	-0.3
1,724,729	+	xylH	HEPCGN_14825	0.32	-0.2
1,724,730	-	xylH	HEPCGN_14825	0.32	-0.2
1,724,763	+	xylH	HEPCGN_14825	0.35	+1.3
1,724,851	+	xylH	HEPCGN_14825	0.42	-0.3
1,724,852	-	xylH	HEPCGN_14825	0.42	-0.2
1,724,852	-	xylH	HEPCGN_14825	0.42	-0.2
1,724,892	+	xylH	HEPCGN_14825	0.46	+1.2
1,724,966	-	xylH	HEPCGN_14825	0.52	-0.7
1,725,080	-	xylH	HEPCGN_14825	0.62	+0.0
1,725,117	+	xylH	HEPCGN_14825	0.65	-1.3
1,725,117	+	xylH	HEPCGN_14825	0.65	-0.4
1,725,118	-	xylH	HEPCGN_14825	0.65	+0.1
1,725,132	+	xylH	HEPCGN_14825	0.66	+0.1
1,725,220	+	xylH	HEPCGN_14825	0.73	-0.5