Strain Fitness in Escherichia coli ECOR38 around HEPCGN_12690

Experiment: RB23

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RB23
1,287,630	+	melB	HEPCGN_12685	0.32	+0.2
1,287,631	-	melB	HEPCGN_12685	0.32	-1.7
1,287,633	+	melB	HEPCGN_12685	0.32	-0.5
1,287,634	-	melB	HEPCGN_12685	0.32	+0.1
1,287,745	-	melB	HEPCGN_12685	0.40	-0.6
1,287,761	-	melB	HEPCGN_12685	0.41	-2.0
1,287,855	+	melB	HEPCGN_12685	0.48	-0.8
1,287,855	+	melB	HEPCGN_12685	0.48	-0.7
1,287,933	+	melB	HEPCGN_12685	0.54	+0.1
1,287,988	+	melB	HEPCGN_12685	0.58	+0.4
1,287,992	-	melB	HEPCGN_12685	0.58	+0.1
1,288,031	-	melB	HEPCGN_12685	0.61	-1.8
1,288,117	+	melB	HEPCGN_12685	0.67	+1.2
1,288,117	+	melB	HEPCGN_12685	0.67	-1.0
1,288,118	-	melB	HEPCGN_12685	0.67	-0.0
1,288,118	-	melB	HEPCGN_12685	0.67	+1.1
1,288,162	+	melB	HEPCGN_12685	0.70	+0.5
1,288,316	-	melB	HEPCGN_12685	0.81	-1.6
1,288,397	-	melB	HEPCGN_12685	0.87	-1.0
1,288,428	+	melB	HEPCGN_12685	0.89	+0.2
1,288,460	-				+0.4
1,288,508	-				+0.1
1,288,528	+				+0.9
1,288,528	+				-0.1
1,288,528	+				+1.2
1,288,529	-				-0.3
1,288,529	-				+1.0
1,288,551	-				+0.2
1,288,551	-				-0.8
1,288,573	+				-1.5
1,288,577	+				-0.7
1,288,580	-				+0.4
1,288,582	+				-0.0
1,288,606	+				-0.5
1,288,607	-				-0.3
1,288,617	+				-1.3
1,288,617	+				-0.9
1,288,630	-				+0.9
1,288,644	-				+0.0
1,288,673	-				-0.7
1,288,678	-				+0.1
1,288,716	+				+1.5
1,288,717	-				-0.7
1,288,752	-				+0.6
1,288,765	+	yihO	HEPCGN_12690	0.10	-1.3
1,288,765	+	yihO	HEPCGN_12690	0.10	-0.8
1,288,766	-	yihO	HEPCGN_12690	0.11	-0.6
1,288,766	-	yihO	HEPCGN_12690	0.11	-0.2
1,288,885	-	yihO	HEPCGN_12690	0.19	+2.4
1,288,885	-	yihO	HEPCGN_12690	0.19	-0.3
1,288,889	+	yihO	HEPCGN_12690	0.19	+0.1
1,288,892	-	yihO	HEPCGN_12690	0.20	+0.5
1,289,109	-	yihO	HEPCGN_12690	0.35	-1.1
1,289,129	+	yihO	HEPCGN_12690	0.36	+1.0
1,289,137	-	yihO	HEPCGN_12690	0.37	+1.0
1,289,233	+	yihO	HEPCGN_12690	0.44	-0.6
1,289,254	+	yihO	HEPCGN_12690	0.45	+0.9
1,289,280	+	yihO	HEPCGN_12690	0.47	-0.3
1,289,280	+	yihO	HEPCGN_12690	0.47	-0.7
1,289,280	+	yihO	HEPCGN_12690	0.47	+0.8
1,289,484	-	yihO	HEPCGN_12690	0.62	-0.1
1,289,527	+	yihO	HEPCGN_12690	0.65	-1.4
1,289,674	-	yihO	HEPCGN_12690	0.75	+0.6
1,289,727	+	yihO	HEPCGN_12690	0.79	-0.8
1,289,735	-	yihO	HEPCGN_12690	0.80	-0.6
1,289,736	+	yihO	HEPCGN_12690	0.80	+1.0
1,289,736	+	yihO	HEPCGN_12690	0.80	+0.8
1,289,736	+	yihO	HEPCGN_12690	0.80	-0.4
1,289,737	-	yihO	HEPCGN_12690	0.80	-0.6
1,289,737	-	yihO	HEPCGN_12690	0.80	+0.9
1,289,787	+	yihO	HEPCGN_12690	0.83	-0.2
1,290,246	+	ompL	HEPCGN_12695	0.23	-0.8
1,290,246	+	ompL	HEPCGN_12695	0.23	-0.1
1,290,247	-	ompL	HEPCGN_12695	0.23	+0.6
1,290,373	-	ompL	HEPCGN_12695	0.41	+1.2
1,290,417	+	ompL	HEPCGN_12695	0.47	+0.1
1,290,457	-	ompL	HEPCGN_12695	0.53	-1.1
1,290,475	-	ompL	HEPCGN_12695	0.56	-0.8
1,290,710	+	ompL	HEPCGN_12695	0.90	-0.2
1,290,730	+				-0.3
1,290,784	-				-0.8
1,290,830	+				+0.8
1,290,873	+				-0.7
1,290,914	-				-0.1
1,291,008	-	yihN	HEPCGN_12700	0.11	-0.2
1,291,020	+	yihN	HEPCGN_12700	0.12	-0.5