Strain Fitness in Escherichia coli ECOR38 around HEPCGN_09610

Experiment: RB23

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfimD and fimC are separated by 66 nucleotidesfimC and fimI are separated by 36 nucleotidesfimI and fimA are separated by 106 nucleotides HEPCGN_09605: fimD - fimbrial usher FimD, at 660,092 to 662,728 fimD HEPCGN_09610: fimC - type 1 fimbria chaperone FimC, at 662,795 to 663,520 fimC HEPCGN_09615: fimI - Fimbrin-like protein fimI precursor, at 663,557 to 664,054 fimI HEPCGN_09620: fimA - Type-1 fimbrial protein, A chain precursor, at 664,161 to 664,709 fimA Position (kb) 662 663 664Strain fitness (log2 ratio) -2 -1 0 1at 661.968 kb on - strand, within fimDat 662.038 kb on + strand, within fimDat 662.041 kb on - strand, within fimDat 662.113 kb on - strand, within fimDat 662.212 kb on + strand, within fimDat 662.212 kb on + strand, within fimDat 662.293 kb on + strand, within fimDat 662.350 kb on + strand, within fimDat 662.369 kb on - strand, within fimDat 662.465 kb on - strandat 662.467 kb on - strandat 662.496 kb on + strandat 662.887 kb on + strand, within fimCat 662.887 kb on + strand, within fimCat 662.970 kb on + strand, within fimCat 663.070 kb on - strand, within fimCat 663.131 kb on - strand, within fimCat 663.284 kb on + strand, within fimCat 663.340 kb on + strand, within fimCat 663.544 kb on - strandat 663.564 kb on + strandat 663.565 kb on - strandat 663.565 kb on - strandat 663.569 kb on + strandat 663.705 kb on - strand, within fimIat 663.824 kb on + strand, within fimIat 663.825 kb on - strand, within fimIat 663.847 kb on + strand, within fimIat 663.848 kb on - strand, within fimIat 663.848 kb on - strand, within fimIat 663.848 kb on - strand, within fimIat 663.857 kb on + strand, within fimIat 664.003 kb on + strand, within fimIat 664.079 kb on + strandat 664.163 kb on - strandat 664.228 kb on + strand, within fimAat 664.231 kb on + strand, within fimAat 664.231 kb on + strand, within fimAat 664.266 kb on - strand, within fimAat 664.286 kb on + strand, within fimAat 664.394 kb on + strand, within fimAat 664.400 kb on + strand, within fimAat 664.401 kb on - strand, within fimAat 664.419 kb on + strand, within fimAat 664.420 kb on - strand, within fimAat 664.420 kb on - strand, within fimA

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Per-strain Table

Position Strand Gene LocusTag Fraction RB23
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661,968 - fimD HEPCGN_09605 0.71 -0.8
662,038 + fimD HEPCGN_09605 0.74 +1.2
662,041 - fimD HEPCGN_09605 0.74 +0.5
662,113 - fimD HEPCGN_09605 0.77 -0.5
662,212 + fimD HEPCGN_09605 0.80 -0.2
662,212 + fimD HEPCGN_09605 0.80 +0.2
662,293 + fimD HEPCGN_09605 0.83 -0.3
662,350 + fimD HEPCGN_09605 0.86 +0.1
662,369 - fimD HEPCGN_09605 0.86 +1.7
662,465 - -0.5
662,467 - +0.4
662,496 + -0.4
662,887 + fimC HEPCGN_09610 0.13 -1.4
662,887 + fimC HEPCGN_09610 0.13 -0.1
662,970 + fimC HEPCGN_09610 0.24 -0.6
663,070 - fimC HEPCGN_09610 0.38 -0.4
663,131 - fimC HEPCGN_09610 0.46 -1.2
663,284 + fimC HEPCGN_09610 0.67 -0.7
663,340 + fimC HEPCGN_09610 0.75 +0.3
663,544 - +1.4
663,564 + -0.4
663,565 - -0.0
663,565 - -0.4
663,569 + -0.1
663,705 - fimI HEPCGN_09615 0.30 -0.3
663,824 + fimI HEPCGN_09615 0.54 +0.4
663,825 - fimI HEPCGN_09615 0.54 -0.7
663,847 + fimI HEPCGN_09615 0.58 -1.8
663,848 - fimI HEPCGN_09615 0.58 -0.9
663,848 - fimI HEPCGN_09615 0.58 -0.1
663,848 - fimI HEPCGN_09615 0.58 +0.0
663,857 + fimI HEPCGN_09615 0.60 -0.2
664,003 + fimI HEPCGN_09615 0.90 -0.4
664,079 + +0.1
664,163 - -0.3
664,228 + fimA HEPCGN_09620 0.12 -1.7
664,231 + fimA HEPCGN_09620 0.13 +0.0
664,231 + fimA HEPCGN_09620 0.13 -0.1
664,266 - fimA HEPCGN_09620 0.19 -1.3
664,286 + fimA HEPCGN_09620 0.23 +0.4
664,394 + fimA HEPCGN_09620 0.42 -0.3
664,400 + fimA HEPCGN_09620 0.44 +0.0
664,401 - fimA HEPCGN_09620 0.44 -1.2
664,419 + fimA HEPCGN_09620 0.47 -0.4
664,420 - fimA HEPCGN_09620 0.47 -0.7
664,420 - fimA HEPCGN_09620 0.47 -0.1

Or see this region's nucleotide sequence