Experiment: RB23
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bolA and yajG are separated by 307 nucleotides yajG and ampG are separated by 43 nucleotides ampG and cyoA are separated by 459 nucleotides
HEPCGN_06960: bolA - transcriptional regulator BolA, at 128,451 to 128,765
bolA
HEPCGN_06965: yajG - Uncharacterized lipoprotein YajG, at 129,073 to 129,651
yajG
HEPCGN_06970: ampG - muropeptide MFS transporter AmpG, at 129,695 to 131,170
ampG
HEPCGN_06975: cyoA - cytochrome o ubiquinol oxidase subunit II, at 131,630 to 132,577
cyoA
Position (kb) 129
130
131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 128.716 kb on - strand, within bolA at 128.760 kb on + strand at 128.760 kb on + strand at 128.812 kb on - strand at 128.815 kb on + strand at 128.816 kb on - strand at 128.816 kb on - strand at 128.847 kb on + strand at 128.848 kb on - strand at 128.891 kb on + strand at 128.891 kb on + strand at 128.891 kb on + strand at 128.982 kb on - strand at 129.019 kb on + strand at 129.051 kb on - strand at 129.099 kb on - strand at 129.112 kb on - strand at 129.144 kb on + strand, within yajG at 129.403 kb on + strand, within yajG at 129.505 kb on + strand, within yajG at 129.506 kb on - strand, within yajG at 129.600 kb on + strand at 129.601 kb on - strand at 129.707 kb on + strand at 129.707 kb on + strand at 129.708 kb on - strand at 129.741 kb on + strand at 129.742 kb on - strand at 129.798 kb on + strand at 129.870 kb on - strand, within ampG at 129.877 kb on + strand, within ampG at 129.966 kb on + strand, within ampG at 129.967 kb on - strand, within ampG at 130.069 kb on + strand, within ampG at 130.223 kb on + strand, within ampG at 130.223 kb on + strand, within ampG at 130.255 kb on + strand, within ampG at 130.255 kb on + strand, within ampG at 130.255 kb on + strand, within ampG at 130.360 kb on + strand, within ampG at 130.385 kb on - strand, within ampG at 130.395 kb on - strand, within ampG at 130.395 kb on - strand, within ampG at 130.395 kb on - strand, within ampG at 130.396 kb on + strand, within ampG at 130.473 kb on + strand, within ampG at 130.473 kb on + strand, within ampG at 130.473 kb on + strand, within ampG at 130.527 kb on - strand, within ampG at 130.588 kb on - strand, within ampG at 130.634 kb on - strand, within ampG at 130.634 kb on - strand, within ampG at 130.693 kb on + strand, within ampG at 130.729 kb on + strand, within ampG at 130.729 kb on + strand, within ampG at 130.729 kb on + strand, within ampG at 130.732 kb on + strand, within ampG at 130.732 kb on + strand, within ampG at 130.783 kb on - strand, within ampG at 130.793 kb on + strand, within ampG at 130.873 kb on - strand, within ampG at 130.883 kb on - strand, within ampG at 130.916 kb on + strand, within ampG at 130.919 kb on - strand, within ampG at 131.168 kb on + strand at 131.168 kb on + strand at 131.169 kb on - strand at 131.180 kb on - strand at 131.183 kb on - strand at 131.246 kb on - strand at 131.270 kb on - strand at 131.456 kb on - strand at 131.507 kb on + strand at 131.507 kb on + strand at 131.555 kb on - strand at 131.645 kb on + strand at 131.651 kb on - strand at 131.674 kb on - strand at 131.689 kb on - strand at 131.718 kb on + strand at 131.719 kb on - strand at 131.834 kb on + strand, within cyoA at 131.857 kb on + strand, within cyoA at 131.858 kb on - strand, within cyoA at 131.861 kb on + strand, within cyoA at 131.861 kb on + strand, within cyoA at 131.862 kb on - strand, within cyoA at 131.913 kb on + strand, within cyoA at 131.914 kb on - strand, within cyoA at 131.917 kb on + strand, within cyoA at 131.917 kb on + strand, within cyoA at 131.918 kb on - strand, within cyoA at 131.922 kb on + strand, within cyoA at 131.922 kb on + strand, within cyoA at 131.944 kb on - strand, within cyoA at 131.977 kb on + strand, within cyoA
Per-strain Table
Position Strand Gene LocusTag Fraction RB23 remove 128,716 - bolA HEPCGN_06960 0.84 +0.6 128,760 + -0.0 128,760 + -0.6 128,812 - -0.2 128,815 + -0.2 128,816 - +0.8 128,816 - +0.4 128,847 + -3.0 128,848 - +0.0 128,891 + +0.2 128,891 + -0.1 128,891 + +0.8 128,982 - +1.0 129,019 + -0.8 129,051 - -1.1 129,099 - +0.5 129,112 - -0.1 129,144 + yajG HEPCGN_06965 0.12 -0.4 129,403 + yajG HEPCGN_06965 0.57 +0.9 129,505 + yajG HEPCGN_06965 0.75 -0.6 129,506 - yajG HEPCGN_06965 0.75 -1.7 129,600 + -0.0 129,601 - -0.2 129,707 + -0.2 129,707 + -2.0 129,708 - -0.5 129,741 + -0.4 129,742 - +0.2 129,798 + -1.2 129,870 - ampG HEPCGN_06970 0.12 -1.2 129,877 + ampG HEPCGN_06970 0.12 -0.9 129,966 + ampG HEPCGN_06970 0.18 +0.1 129,967 - ampG HEPCGN_06970 0.18 -0.1 130,069 + ampG HEPCGN_06970 0.25 -0.6 130,223 + ampG HEPCGN_06970 0.36 -0.7 130,223 + ampG HEPCGN_06970 0.36 -2.1 130,255 + ampG HEPCGN_06970 0.38 -1.5 130,255 + ampG HEPCGN_06970 0.38 -0.3 130,255 + ampG HEPCGN_06970 0.38 -0.4 130,360 + ampG HEPCGN_06970 0.45 +0.2 130,385 - ampG HEPCGN_06970 0.47 -0.4 130,395 - ampG HEPCGN_06970 0.47 -1.2 130,395 - ampG HEPCGN_06970 0.47 +0.4 130,395 - ampG HEPCGN_06970 0.47 -1.1 130,396 + ampG HEPCGN_06970 0.47 -0.2 130,473 + ampG HEPCGN_06970 0.53 +1.0 130,473 + ampG HEPCGN_06970 0.53 -1.7 130,473 + ampG HEPCGN_06970 0.53 -0.4 130,527 - ampG HEPCGN_06970 0.56 -0.0 130,588 - ampG HEPCGN_06970 0.61 -0.9 130,634 - ampG HEPCGN_06970 0.64 -1.0 130,634 - ampG HEPCGN_06970 0.64 +0.2 130,693 + ampG HEPCGN_06970 0.68 +0.9 130,729 + ampG HEPCGN_06970 0.70 -0.7 130,729 + ampG HEPCGN_06970 0.70 +0.4 130,729 + ampG HEPCGN_06970 0.70 +1.1 130,732 + ampG HEPCGN_06970 0.70 -0.4 130,732 + ampG HEPCGN_06970 0.70 +0.2 130,783 - ampG HEPCGN_06970 0.74 +0.4 130,793 + ampG HEPCGN_06970 0.74 -2.2 130,873 - ampG HEPCGN_06970 0.80 -0.5 130,883 - ampG HEPCGN_06970 0.80 -1.3 130,916 + ampG HEPCGN_06970 0.83 -0.2 130,919 - ampG HEPCGN_06970 0.83 -1.1 131,168 + +0.9 131,168 + -0.5 131,169 - +0.3 131,180 - +0.8 131,183 - -0.4 131,246 - -0.7 131,270 - +0.2 131,456 - -0.8 131,507 + +1.2 131,507 + -0.8 131,555 - +0.3 131,645 + -0.4 131,651 - +0.5 131,674 - -0.7 131,689 - +1.2 131,718 + +0.2 131,719 - -0.1 131,834 + cyoA HEPCGN_06975 0.22 +0.1 131,857 + cyoA HEPCGN_06975 0.24 -2.4 131,858 - cyoA HEPCGN_06975 0.24 +1.1 131,861 + cyoA HEPCGN_06975 0.24 +0.3 131,861 + cyoA HEPCGN_06975 0.24 +1.3 131,862 - cyoA HEPCGN_06975 0.24 +0.4 131,913 + cyoA HEPCGN_06975 0.30 +0.1 131,914 - cyoA HEPCGN_06975 0.30 -1.7 131,917 + cyoA HEPCGN_06975 0.30 +0.6 131,917 + cyoA HEPCGN_06975 0.30 +0.2 131,918 - cyoA HEPCGN_06975 0.30 +1.2 131,922 + cyoA HEPCGN_06975 0.31 +0.1 131,922 + cyoA HEPCGN_06975 0.31 +1.3 131,944 - cyoA HEPCGN_06975 0.33 +0.0 131,977 + cyoA HEPCGN_06975 0.37 +0.8
Or see this region's nucleotide sequence