Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04610

Experiment: RB23

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargS and yecM are separated by 215 nucleotidesyecM and cutC are separated by 13 nucleotidescutC and torY are separated by 386 nucleotides HEPCGN_04600: argS - arginine--tRNA ligase, at 801,269 to 803,002 argS HEPCGN_04605: yecM - VOC family protein, at 803,218 to 803,784 yecM HEPCGN_04610: cutC - copper homeostasis protein CutC, at 803,798 to 804,544 cutC HEPCGN_04620: torY - Cytochrome c-type protein TorY, at 804,931 to 806,031 torY Position (kb) 803 804 805Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 803.073 kb on - strandat 803.183 kb on - strandat 803.428 kb on - strand, within yecMat 803.457 kb on + strand, within yecMat 803.511 kb on - strand, within yecMat 803.730 kb on + strandat 803.786 kb on + strandat 803.877 kb on + strand, within cutCat 804.386 kb on - strand, within cutCat 804.470 kb on + strandat 804.686 kb on + strandat 804.687 kb on - strandat 805.024 kb on - strandat 805.068 kb on + strand, within torYat 805.173 kb on - strand, within torYat 805.413 kb on + strand, within torYat 805.525 kb on - strand, within torY

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Per-strain Table

Position Strand Gene LocusTag Fraction RB23
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803,073 - +2.2
803,183 - -0.5
803,428 - yecM HEPCGN_04605 0.37 -3.1
803,457 + yecM HEPCGN_04605 0.42 +0.9
803,511 - yecM HEPCGN_04605 0.52 +1.1
803,730 + -0.4
803,786 + +0.0
803,877 + cutC HEPCGN_04610 0.11 -2.1
804,386 - cutC HEPCGN_04610 0.79 +0.7
804,470 + +0.7
804,686 + +1.2
804,687 - +0.1
805,024 - -0.1
805,068 + torY HEPCGN_04620 0.12 -0.4
805,173 - torY HEPCGN_04620 0.22 +0.8
805,413 + torY HEPCGN_04620 0.44 -0.1
805,525 - torY HEPCGN_04620 0.54 +0.6

Or see this region's nucleotide sequence