Experiment: RB23
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04280 and HEPCGN_04285 overlap by 17 nucleotides HEPCGN_04285 and HEPCGN_04290 are separated by 23 nucleotides HEPCGN_04290 and HEPCGN_04295 are separated by 138 nucleotides HEPCGN_04295 and HEPCGN_04300 overlap by 4 nucleotides HEPCGN_04300 and HEPCGN_04305 overlap by 4 nucleotides
HEPCGN_04280: HEPCGN_04280 - phage virion morphogenesis protein, at 750,673 to 751,317
_04280
HEPCGN_04285: HEPCGN_04285 - phage tail protein, at 751,301 to 751,768
_04285
HEPCGN_04290: HEPCGN_04290 - 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 751,792 to 753,672
_04290
HEPCGN_04295: HEPCGN_04295 - DUF2570 domain-containing protein, at 753,811 to 754,218
_04295
HEPCGN_04300: HEPCGN_04300 - peptidase M15, at 754,215 to 754,607
_04300
HEPCGN_04305: HEPCGN_04305 - holin, at 754,604 to 754,927
_04305
Position (kb) 751
752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2 at 750.826 kb on - strand, within HEPCGN_04280 at 750.826 kb on - strand, within HEPCGN_04280 at 750.959 kb on - strand, within HEPCGN_04280 at 751.098 kb on + strand, within HEPCGN_04280 at 751.303 kb on - strand at 751.337 kb on + strand at 751.338 kb on - strand at 751.457 kb on - strand, within HEPCGN_04285 at 751.516 kb on + strand, within HEPCGN_04285 at 751.635 kb on + strand, within HEPCGN_04285 at 751.636 kb on - strand, within HEPCGN_04285 at 751.762 kb on + strand at 751.763 kb on - strand at 751.763 kb on - strand at 751.793 kb on + strand at 751.794 kb on - strand at 751.794 kb on - strand at 751.795 kb on + strand at 751.796 kb on - strand at 751.807 kb on - strand at 751.858 kb on - strand at 752.009 kb on + strand, within HEPCGN_04290 at 752.518 kb on - strand, within HEPCGN_04290 at 752.541 kb on + strand, within HEPCGN_04290 at 752.598 kb on + strand, within HEPCGN_04290 at 752.604 kb on + strand, within HEPCGN_04290 at 752.604 kb on + strand, within HEPCGN_04290 at 752.762 kb on + strand, within HEPCGN_04290 at 752.774 kb on + strand, within HEPCGN_04290 at 752.774 kb on + strand, within HEPCGN_04290 at 752.775 kb on - strand, within HEPCGN_04290 at 752.775 kb on - strand, within HEPCGN_04290 at 752.793 kb on - strand, within HEPCGN_04290 at 752.793 kb on - strand, within HEPCGN_04290 at 752.820 kb on + strand, within HEPCGN_04290 at 752.820 kb on + strand, within HEPCGN_04290 at 752.821 kb on - strand, within HEPCGN_04290 at 752.918 kb on + strand, within HEPCGN_04290 at 752.919 kb on - strand, within HEPCGN_04290 at 753.026 kb on + strand, within HEPCGN_04290 at 753.028 kb on + strand, within HEPCGN_04290 at 753.082 kb on - strand, within HEPCGN_04290 at 753.167 kb on + strand, within HEPCGN_04290 at 753.168 kb on - strand, within HEPCGN_04290 at 753.168 kb on - strand, within HEPCGN_04290 at 753.255 kb on + strand, within HEPCGN_04290 at 753.256 kb on - strand, within HEPCGN_04290 at 753.308 kb on + strand, within HEPCGN_04290 at 753.308 kb on + strand, within HEPCGN_04290 at 753.309 kb on - strand, within HEPCGN_04290 at 753.312 kb on + strand, within HEPCGN_04290 at 753.312 kb on + strand, within HEPCGN_04290 at 753.312 kb on + strand, within HEPCGN_04290 at 753.313 kb on - strand, within HEPCGN_04290 at 753.384 kb on - strand, within HEPCGN_04290 at 753.452 kb on + strand, within HEPCGN_04290 at 753.453 kb on - strand, within HEPCGN_04290 at 753.558 kb on - strand at 753.602 kb on + strand at 753.602 kb on + strand at 753.602 kb on + strand at 753.858 kb on - strand, within HEPCGN_04295 at 753.858 kb on - strand, within HEPCGN_04295 at 753.970 kb on + strand, within HEPCGN_04295 at 753.971 kb on - strand, within HEPCGN_04295 at 754.047 kb on + strand, within HEPCGN_04295 at 754.382 kb on - strand, within HEPCGN_04300 at 754.426 kb on - strand, within HEPCGN_04300 at 754.554 kb on + strand, within HEPCGN_04300 at 754.633 kb on + strand at 754.658 kb on + strand, within HEPCGN_04305
Per-strain Table
Position Strand Gene LocusTag Fraction RB23 remove 750,826 - HEPCGN_04280 0.24 -2.1 750,826 - HEPCGN_04280 0.24 +0.9 750,959 - HEPCGN_04280 0.44 +0.3 751,098 + HEPCGN_04280 0.66 -0.8 751,303 - +0.6 751,337 + +0.3 751,338 - +0.1 751,457 - HEPCGN_04285 0.33 +1.0 751,516 + HEPCGN_04285 0.46 +0.1 751,635 + HEPCGN_04285 0.71 +1.2 751,636 - HEPCGN_04285 0.72 -1.1 751,762 + -0.6 751,763 - +0.7 751,763 - -0.8 751,793 + -0.2 751,794 - -0.4 751,794 - +0.2 751,795 + -0.3 751,796 - +0.6 751,807 - -0.6 751,858 - +0.7 752,009 + HEPCGN_04290 0.12 +0.8 752,518 - HEPCGN_04290 0.39 -0.2 752,541 + HEPCGN_04290 0.40 -0.8 752,598 + HEPCGN_04290 0.43 -0.8 752,604 + HEPCGN_04290 0.43 +1.4 752,604 + HEPCGN_04290 0.43 -0.4 752,762 + HEPCGN_04290 0.52 +0.2 752,774 + HEPCGN_04290 0.52 -1.5 752,774 + HEPCGN_04290 0.52 -0.4 752,775 - HEPCGN_04290 0.52 -0.2 752,775 - HEPCGN_04290 0.52 +0.8 752,793 - HEPCGN_04290 0.53 +1.0 752,793 - HEPCGN_04290 0.53 -1.5 752,820 + HEPCGN_04290 0.55 -0.8 752,820 + HEPCGN_04290 0.55 -0.3 752,821 - HEPCGN_04290 0.55 -0.1 752,918 + HEPCGN_04290 0.60 +0.2 752,919 - HEPCGN_04290 0.60 -0.1 753,026 + HEPCGN_04290 0.66 -0.1 753,028 + HEPCGN_04290 0.66 +1.2 753,082 - HEPCGN_04290 0.69 +0.2 753,167 + HEPCGN_04290 0.73 -1.1 753,168 - HEPCGN_04290 0.73 +0.0 753,168 - HEPCGN_04290 0.73 +0.3 753,255 + HEPCGN_04290 0.78 +1.2 753,256 - HEPCGN_04290 0.78 -0.9 753,308 + HEPCGN_04290 0.81 +1.2 753,308 + HEPCGN_04290 0.81 +0.5 753,309 - HEPCGN_04290 0.81 +0.3 753,312 + HEPCGN_04290 0.81 -0.9 753,312 + HEPCGN_04290 0.81 +0.2 753,312 + HEPCGN_04290 0.81 -0.5 753,313 - HEPCGN_04290 0.81 +1.5 753,384 - HEPCGN_04290 0.85 +0.1 753,452 + HEPCGN_04290 0.88 -1.5 753,453 - HEPCGN_04290 0.88 -2.2 753,558 - +1.7 753,602 + +0.4 753,602 + +2.0 753,602 + +0.7 753,858 - HEPCGN_04295 0.12 +1.1 753,858 - HEPCGN_04295 0.12 -1.0 753,970 + HEPCGN_04295 0.39 +0.5 753,971 - HEPCGN_04295 0.39 +0.0 754,047 + HEPCGN_04295 0.58 -0.0 754,382 - HEPCGN_04300 0.42 -0.8 754,426 - HEPCGN_04300 0.54 +0.4 754,554 + HEPCGN_04300 0.86 -1.6 754,633 + +0.1 754,658 + HEPCGN_04305 0.17 +0.1
Or see this region's nucleotide sequence