Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04240

Experiment: RB23

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_04235 and HEPCGN_04240 are separated by 12 nucleotidesHEPCGN_04240 and HEPCGN_04245 are separated by 26 nucleotides HEPCGN_04235: HEPCGN_04235 - phage tail tape measure protein, at 741,555 to 744,362 _04235 HEPCGN_04240: HEPCGN_04240 - oxidoreductase, at 744,375 to 744,863 _04240 HEPCGN_04245: HEPCGN_04245 - DNA-invertase, at 744,890 to 745,489 _04245 Position (kb) 744 745Strain fitness (log2 ratio) -1 0 1 2at 743.591 kb on + strand, within HEPCGN_04235at 743.672 kb on + strand, within HEPCGN_04235at 743.856 kb on - strand, within HEPCGN_04235at 743.978 kb on + strand, within HEPCGN_04235at 744.053 kb on + strand, within HEPCGN_04235at 744.072 kb on - strand, within HEPCGN_04235at 744.074 kb on + strand, within HEPCGN_04235at 744.158 kb on - strandat 744.185 kb on - strandat 744.348 kb on + strandat 744.387 kb on + strandat 744.387 kb on + strandat 744.433 kb on + strand, within HEPCGN_04240at 744.498 kb on + strand, within HEPCGN_04240at 744.499 kb on - strand, within HEPCGN_04240at 744.597 kb on + strand, within HEPCGN_04240at 744.597 kb on + strand, within HEPCGN_04240at 744.597 kb on + strand, within HEPCGN_04240at 744.598 kb on - strand, within HEPCGN_04240at 744.599 kb on + strand, within HEPCGN_04240at 744.600 kb on - strand, within HEPCGN_04240at 744.600 kb on - strand, within HEPCGN_04240at 744.600 kb on - strand, within HEPCGN_04240at 744.643 kb on - strand, within HEPCGN_04240at 744.643 kb on - strand, within HEPCGN_04240at 744.651 kb on + strand, within HEPCGN_04240at 744.651 kb on + strand, within HEPCGN_04240at 744.651 kb on + strand, within HEPCGN_04240at 744.651 kb on + strand, within HEPCGN_04240at 744.651 kb on + strand, within HEPCGN_04240at 744.651 kb on + strand, within HEPCGN_04240at 744.652 kb on - strand, within HEPCGN_04240at 744.652 kb on - strand, within HEPCGN_04240at 744.671 kb on + strand, within HEPCGN_04240at 744.788 kb on + strand, within HEPCGN_04240at 744.789 kb on - strand, within HEPCGN_04240at 744.789 kb on - strand, within HEPCGN_04240at 744.810 kb on - strand, within HEPCGN_04240at 744.938 kb on + strandat 744.938 kb on + strandat 744.958 kb on - strand, within HEPCGN_04245at 744.988 kb on - strand, within HEPCGN_04245at 745.123 kb on + strand, within HEPCGN_04245at 745.123 kb on + strand, within HEPCGN_04245at 745.124 kb on - strand, within HEPCGN_04245at 745.136 kb on + strand, within HEPCGN_04245at 745.261 kb on + strand, within HEPCGN_04245at 745.322 kb on - strand, within HEPCGN_04245at 745.334 kb on + strand, within HEPCGN_04245at 745.519 kb on + strandat 745.523 kb on + strandat 745.828 kb on - strandat 745.837 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB23
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743,591 + HEPCGN_04235 0.73 +0.0
743,672 + HEPCGN_04235 0.75 +0.2
743,856 - HEPCGN_04235 0.82 +0.0
743,978 + HEPCGN_04235 0.86 -0.8
744,053 + HEPCGN_04235 0.89 -0.9
744,072 - HEPCGN_04235 0.90 +0.9
744,074 + HEPCGN_04235 0.90 -1.0
744,158 - -0.4
744,185 - +1.0
744,348 + +0.1
744,387 + -0.8
744,387 + -0.5
744,433 + HEPCGN_04240 0.12 -0.3
744,498 + HEPCGN_04240 0.25 +0.2
744,499 - HEPCGN_04240 0.25 +0.1
744,597 + HEPCGN_04240 0.45 +0.1
744,597 + HEPCGN_04240 0.45 -1.4
744,597 + HEPCGN_04240 0.45 -0.4
744,598 - HEPCGN_04240 0.46 -0.3
744,599 + HEPCGN_04240 0.46 +0.6
744,600 - HEPCGN_04240 0.46 +0.2
744,600 - HEPCGN_04240 0.46 -0.5
744,600 - HEPCGN_04240 0.46 -0.2
744,643 - HEPCGN_04240 0.55 +1.0
744,643 - HEPCGN_04240 0.55 -0.4
744,651 + HEPCGN_04240 0.56 -0.4
744,651 + HEPCGN_04240 0.56 +0.4
744,651 + HEPCGN_04240 0.56 -0.2
744,651 + HEPCGN_04240 0.56 +0.0
744,651 + HEPCGN_04240 0.56 +0.0
744,651 + HEPCGN_04240 0.56 +1.0
744,652 - HEPCGN_04240 0.57 -0.4
744,652 - HEPCGN_04240 0.57 -0.1
744,671 + HEPCGN_04240 0.61 +1.5
744,788 + HEPCGN_04240 0.84 -0.4
744,789 - HEPCGN_04240 0.85 +1.2
744,789 - HEPCGN_04240 0.85 -0.6
744,810 - HEPCGN_04240 0.89 +2.5
744,938 + -0.4
744,938 + -0.1
744,958 - HEPCGN_04245 0.11 +0.4
744,988 - HEPCGN_04245 0.16 +0.4
745,123 + HEPCGN_04245 0.39 +0.3
745,123 + HEPCGN_04245 0.39 -0.7
745,124 - HEPCGN_04245 0.39 -0.7
745,136 + HEPCGN_04245 0.41 +0.9
745,261 + HEPCGN_04245 0.62 -0.1
745,322 - HEPCGN_04245 0.72 -0.0
745,334 + HEPCGN_04245 0.74 +1.3
745,519 + +0.6
745,523 + +1.0
745,828 - -1.5
745,837 + +0.6

Or see this region's nucleotide sequence