Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03370

Experiment: RB23

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and HEPCGN_03380 are separated by 89 nucleotidesHEPCGN_03380 and tnp-IS600 are separated by 27 nucleotides HEPCGN_03370: tnp-IS3 - IS3 family transposase, at 580,495 to 580,806 tnp-IS3 HEPCGN_03380: HEPCGN_03380 - Phosphotriesterase-related protein, at 580,896 to 581,693 _03380 HEPCGN_03385: tnp-IS600 - IS3 family IS600 transposase, at 581,721 to 582,539 tnp-IS600 Position (kb) 580 581Strain fitness (log2 ratio) -1 0 1 2at 580.909 kb on - strandat 580.975 kb on + strandat 581.039 kb on + strand, within HEPCGN_03380at 581.153 kb on + strand, within HEPCGN_03380at 581.153 kb on + strand, within HEPCGN_03380at 581.154 kb on - strand, within HEPCGN_03380at 581.196 kb on - strand, within HEPCGN_03380at 581.261 kb on + strand, within HEPCGN_03380at 581.262 kb on - strand, within HEPCGN_03380at 581.262 kb on - strand, within HEPCGN_03380at 581.286 kb on + strand, within HEPCGN_03380at 581.286 kb on + strand, within HEPCGN_03380at 581.339 kb on + strand, within HEPCGN_03380at 581.339 kb on + strand, within HEPCGN_03380at 581.340 kb on - strand, within HEPCGN_03380at 581.397 kb on - strand, within HEPCGN_03380at 581.431 kb on - strand, within HEPCGN_03380at 581.522 kb on + strand, within HEPCGN_03380at 581.592 kb on + strand, within HEPCGN_03380

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Per-strain Table

Position Strand Gene LocusTag Fraction RB23
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580,909 - -1.1
580,975 + +0.2
581,039 + HEPCGN_03380 0.18 +0.4
581,153 + HEPCGN_03380 0.32 +1.1
581,153 + HEPCGN_03380 0.32 -0.6
581,154 - HEPCGN_03380 0.32 -1.6
581,196 - HEPCGN_03380 0.38 +0.0
581,261 + HEPCGN_03380 0.46 +2.2
581,262 - HEPCGN_03380 0.46 -0.3
581,262 - HEPCGN_03380 0.46 -1.0
581,286 + HEPCGN_03380 0.49 +0.6
581,286 + HEPCGN_03380 0.49 +0.0
581,339 + HEPCGN_03380 0.56 -0.6
581,339 + HEPCGN_03380 0.56 -0.8
581,340 - HEPCGN_03380 0.56 +0.2
581,397 - HEPCGN_03380 0.63 +0.6
581,431 - HEPCGN_03380 0.67 +2.2
581,522 + HEPCGN_03380 0.78 -0.4
581,592 + HEPCGN_03380 0.87 +0.6

Or see this region's nucleotide sequence