Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03365

Experiment: RB23

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_03355 and tra5 overlap by 35 nucleotidestra5 and ltrA are separated by 191 nucleotides HEPCGN_03355: HEPCGN_03355 - Ferredoxin reductase, at 576,665 to 577,399 _03355 HEPCGN_03360: tra5 - IS3 family transposase, at 577,365 to 577,736 tra5 HEPCGN_03365: ltrA - group II intron reverse transcriptase/maturase, at 577,928 to 579,451 ltrA Position (kb) 577 578 579 580Strain fitness (log2 ratio) -1 0 1at 577.231 kb on + strand, within HEPCGN_03355at 577.231 kb on + strand, within HEPCGN_03355at 577.234 kb on + strand, within HEPCGN_03355at 577.235 kb on - strand, within HEPCGN_03355at 577.273 kb on - strand, within HEPCGN_03355

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Per-strain Table

Position Strand Gene LocusTag Fraction RB23
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577,231 + HEPCGN_03355 0.77 -0.6
577,231 + HEPCGN_03355 0.77 -1.1
577,234 + HEPCGN_03355 0.77 -1.4
577,235 - HEPCGN_03355 0.78 +0.6
577,273 - HEPCGN_03355 0.83 -0.2

Or see this region's nucleotide sequence