Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21035 and ABI39_RS21040 are separated by 475 nucleotides ABI39_RS21040 and ABI39_RS21045 are separated by 257 nucleotides ABI39_RS21045 and ABI39_RS21050 are separated by 60 nucleotides
ABI39_RS21035: ABI39_RS21035 - DUF308 domain-containing protein, at 5,180,327 to 5,180,893
_RS21035
ABI39_RS21040: ABI39_RS21040 - YtxH domain-containing protein, at 5,181,369 to 5,181,629
_RS21040
ABI39_RS21045: ABI39_RS21045 - tryptophan synthase subunit beta, at 5,181,887 to 5,183,086
_RS21045
ABI39_RS21050: ABI39_RS21050 - anthranilate synthase component I family protein, at 5,183,147 to 5,184,547
_RS21050
Position (kb) 5181
5182
5183
5184 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 5180.927 kb on + strand at 5180.968 kb on + strand at 5180.968 kb on + strand at 5181.029 kb on - strand at 5181.148 kb on - strand at 5181.250 kb on - strand at 5181.267 kb on - strand at 5181.275 kb on + strand at 5181.363 kb on - strand at 5181.363 kb on - strand at 5181.403 kb on + strand, within ABI39_RS21040 at 5181.427 kb on + strand, within ABI39_RS21040 at 5181.478 kb on - strand, within ABI39_RS21040 at 5181.496 kb on + strand, within ABI39_RS21040 at 5181.536 kb on + strand, within ABI39_RS21040 at 5181.537 kb on - strand, within ABI39_RS21040 at 5181.551 kb on - strand, within ABI39_RS21040 at 5181.608 kb on - strand at 5181.624 kb on - strand at 5181.717 kb on + strand at 5181.718 kb on - strand at 5181.718 kb on - strand at 5181.721 kb on + strand at 5181.725 kb on + strand at 5181.776 kb on + strand at 5181.783 kb on - strand at 5181.797 kb on + strand at 5181.877 kb on + strand at 5181.917 kb on + strand at 5182.292 kb on + strand, within ABI39_RS21045 at 5182.449 kb on - strand, within ABI39_RS21045 at 5182.449 kb on - strand, within ABI39_RS21045 at 5182.451 kb on + strand, within ABI39_RS21045 at 5182.566 kb on - strand, within ABI39_RS21045 at 5182.574 kb on + strand, within ABI39_RS21045 at 5182.628 kb on + strand, within ABI39_RS21045 at 5182.628 kb on + strand, within ABI39_RS21045 at 5182.629 kb on - strand, within ABI39_RS21045 at 5182.633 kb on - strand, within ABI39_RS21045 at 5182.933 kb on + strand, within ABI39_RS21045 at 5183.091 kb on + strand at 5183.128 kb on + strand at 5183.200 kb on + strand at 5183.212 kb on + strand at 5183.227 kb on - strand at 5183.271 kb on - strand at 5183.456 kb on + strand, within ABI39_RS21050 at 5183.571 kb on - strand, within ABI39_RS21050 at 5183.578 kb on - strand, within ABI39_RS21050 at 5183.585 kb on + strand, within ABI39_RS21050 at 5183.696 kb on + strand, within ABI39_RS21050 at 5183.696 kb on + strand, within ABI39_RS21050 at 5183.697 kb on - strand, within ABI39_RS21050
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 5,180,927 + -0.1 5,180,968 + +0.2 5,180,968 + +0.0 5,181,029 - -0.0 5,181,148 - -0.1 5,181,250 - +0.1 5,181,267 - -0.1 5,181,275 + -0.4 5,181,363 - +0.1 5,181,363 - -1.2 5,181,403 + ABI39_RS21040 0.13 -0.5 5,181,427 + ABI39_RS21040 0.22 +0.1 5,181,478 - ABI39_RS21040 0.42 -0.7 5,181,496 + ABI39_RS21040 0.49 +0.0 5,181,536 + ABI39_RS21040 0.64 +0.1 5,181,537 - ABI39_RS21040 0.64 -1.0 5,181,551 - ABI39_RS21040 0.70 +0.2 5,181,608 - +0.1 5,181,624 - +0.4 5,181,717 + -3.0 5,181,718 - -4.1 5,181,718 - -3.8 5,181,721 + -2.8 5,181,725 + -2.0 5,181,776 + -2.1 5,181,783 - -4.1 5,181,797 + -0.6 5,181,877 + -3.2 5,181,917 + -2.9 5,182,292 + ABI39_RS21045 0.34 -2.5 5,182,449 - ABI39_RS21045 0.47 -4.9 5,182,449 - ABI39_RS21045 0.47 -3.8 5,182,451 + ABI39_RS21045 0.47 -0.8 5,182,566 - ABI39_RS21045 0.57 -2.5 5,182,574 + ABI39_RS21045 0.57 -3.4 5,182,628 + ABI39_RS21045 0.62 -3.0 5,182,628 + ABI39_RS21045 0.62 -4.5 5,182,629 - ABI39_RS21045 0.62 -3.6 5,182,633 - ABI39_RS21045 0.62 -4.4 5,182,933 + ABI39_RS21045 0.87 -3.4 5,183,091 + -3.2 5,183,128 + -1.5 5,183,200 + -4.4 5,183,212 + -4.6 5,183,227 - -4.9 5,183,271 - -4.6 5,183,456 + ABI39_RS21050 0.22 -5.9 5,183,571 - ABI39_RS21050 0.30 -4.8 5,183,578 - ABI39_RS21050 0.31 -5.4 5,183,585 + ABI39_RS21050 0.31 -4.1 5,183,696 + ABI39_RS21050 0.39 -4.1 5,183,696 + ABI39_RS21050 0.39 -5.0 5,183,697 - ABI39_RS21050 0.39 -3.9
Or see this region's nucleotide sequence