Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS19895 and ABI39_RS19900 are separated by 218 nucleotides ABI39_RS19900 and ABI39_RS19905 are separated by 32 nucleotides ABI39_RS19905 and ABI39_RS19910 are separated by 32 nucleotides ABI39_RS19910 and ABI39_RS19915 are separated by 264 nucleotides ABI39_RS19915 and ABI39_RS19920 overlap by 1 nucleotides ABI39_RS19920 and ABI39_RS19925 are separated by 41 nucleotides
ABI39_RS19895: ABI39_RS19895 - site-specific integrase, at 4,922,857 to 4,923,996
_RS19895
ABI39_RS19900: ABI39_RS19900 - tRNA-Asp, at 4,924,215 to 4,924,288
_RS19900
ABI39_RS19905: ABI39_RS19905 - tRNA-Asp, at 4,924,321 to 4,924,394
_RS19905
ABI39_RS19910: ABI39_RS19910 - tRNA-Asp, at 4,924,427 to 4,924,500
_RS19910
ABI39_RS19915: ABI39_RS19915 - formyltetrahydrofolate deformylase, at 4,924,765 to 4,925,622
_RS19915
ABI39_RS19920: ABI39_RS19920 - imidazole glycerol phosphate synthase subunit HisH, at 4,925,622 to 4,926,212
_RS19920
ABI39_RS19925: ABI39_RS19925 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 4,926,254 to 4,926,973
_RS19925
Position (kb) 4924
4925
4926 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4923.901 kb on - strand at 4924.297 kb on + strand at 4924.868 kb on + strand, within ABI39_RS19915 at 4924.869 kb on - strand, within ABI39_RS19915 at 4924.898 kb on + strand, within ABI39_RS19915 at 4924.913 kb on + strand, within ABI39_RS19915 at 4924.913 kb on + strand, within ABI39_RS19915 at 4924.914 kb on - strand, within ABI39_RS19915 at 4924.945 kb on - strand, within ABI39_RS19915 at 4924.956 kb on - strand, within ABI39_RS19915 at 4925.025 kb on - strand, within ABI39_RS19915 at 4925.043 kb on - strand, within ABI39_RS19915 at 4925.076 kb on + strand, within ABI39_RS19915 at 4925.130 kb on - strand, within ABI39_RS19915 at 4925.182 kb on + strand, within ABI39_RS19915 at 4925.253 kb on + strand, within ABI39_RS19915 at 4925.254 kb on - strand, within ABI39_RS19915 at 4925.254 kb on - strand, within ABI39_RS19915 at 4925.282 kb on - strand, within ABI39_RS19915 at 4925.282 kb on - strand, within ABI39_RS19915 at 4925.339 kb on + strand, within ABI39_RS19915 at 4925.340 kb on - strand, within ABI39_RS19915 at 4925.432 kb on - strand, within ABI39_RS19915 at 4925.432 kb on - strand, within ABI39_RS19915 at 4925.461 kb on - strand, within ABI39_RS19915 at 4925.477 kb on + strand, within ABI39_RS19915 at 4925.516 kb on + strand, within ABI39_RS19915 at 4925.661 kb on + strand at 4925.674 kb on - strand at 4925.725 kb on + strand, within ABI39_RS19920 at 4925.846 kb on + strand, within ABI39_RS19920 at 4925.847 kb on - strand, within ABI39_RS19920 at 4925.996 kb on - strand, within ABI39_RS19920 at 4926.046 kb on + strand, within ABI39_RS19920 at 4926.051 kb on - strand, within ABI39_RS19920 at 4926.058 kb on - strand, within ABI39_RS19920 at 4926.098 kb on + strand, within ABI39_RS19920 at 4926.099 kb on - strand, within ABI39_RS19920 at 4926.219 kb on - strand at 4926.223 kb on + strand at 4926.224 kb on - strand at 4926.225 kb on + strand at 4926.227 kb on + strand at 4926.229 kb on + strand at 4926.230 kb on - strand at 4926.233 kb on - strand at 4926.258 kb on + strand at 4926.264 kb on + strand at 4926.265 kb on - strand at 4926.339 kb on - strand, within ABI39_RS19925 at 4926.523 kb on - strand, within ABI39_RS19925
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,923,901 - -0.4 4,924,297 + +0.6 4,924,868 + ABI39_RS19915 0.12 -0.4 4,924,869 - ABI39_RS19915 0.12 -1.4 4,924,898 + ABI39_RS19915 0.16 -0.9 4,924,913 + ABI39_RS19915 0.17 -1.1 4,924,913 + ABI39_RS19915 0.17 -1.4 4,924,914 - ABI39_RS19915 0.17 -3.6 4,924,945 - ABI39_RS19915 0.21 -2.4 4,924,956 - ABI39_RS19915 0.22 -3.0 4,925,025 - ABI39_RS19915 0.30 -2.1 4,925,043 - ABI39_RS19915 0.32 -2.0 4,925,076 + ABI39_RS19915 0.36 -0.5 4,925,130 - ABI39_RS19915 0.43 -1.7 4,925,182 + ABI39_RS19915 0.49 -0.1 4,925,253 + ABI39_RS19915 0.57 -1.2 4,925,254 - ABI39_RS19915 0.57 -1.7 4,925,254 - ABI39_RS19915 0.57 -1.0 4,925,282 - ABI39_RS19915 0.60 -2.2 4,925,282 - ABI39_RS19915 0.60 -1.7 4,925,339 + ABI39_RS19915 0.67 -0.4 4,925,340 - ABI39_RS19915 0.67 -2.3 4,925,432 - ABI39_RS19915 0.78 -2.6 4,925,432 - ABI39_RS19915 0.78 -3.6 4,925,461 - ABI39_RS19915 0.81 -2.4 4,925,477 + ABI39_RS19915 0.83 -0.7 4,925,516 + ABI39_RS19915 0.88 -0.4 4,925,661 + -3.7 4,925,674 - -3.7 4,925,725 + ABI39_RS19920 0.17 -4.6 4,925,846 + ABI39_RS19920 0.38 -1.3 4,925,847 - ABI39_RS19920 0.38 -5.0 4,925,996 - ABI39_RS19920 0.63 -5.0 4,926,046 + ABI39_RS19920 0.72 -3.6 4,926,051 - ABI39_RS19920 0.73 -4.0 4,926,058 - ABI39_RS19920 0.74 -2.9 4,926,098 + ABI39_RS19920 0.81 -3.8 4,926,099 - ABI39_RS19920 0.81 -2.5 4,926,219 - -5.5 4,926,223 + +0.2 4,926,224 - -2.6 4,926,225 + -0.3 4,926,227 + +0.3 4,926,229 + +0.0 4,926,230 - -4.0 4,926,233 - -4.7 4,926,258 + -5.0 4,926,264 + -4.9 4,926,265 - -4.9 4,926,339 - ABI39_RS19925 0.12 -4.8 4,926,523 - ABI39_RS19925 0.37 -2.4
Or see this region's nucleotide sequence