Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS17170 and ABI39_RS17175 are separated by 19 nucleotides ABI39_RS17175 and ABI39_RS17180 are separated by 10 nucleotides ABI39_RS17180 and ABI39_RS17185 are separated by 129 nucleotides
ABI39_RS17170: ABI39_RS17170 - protein BatD, at 4,342,615 to 4,344,450
_RS17170
ABI39_RS17175: ABI39_RS17175 - tetratricopeptide repeat protein, at 4,344,470 to 4,345,288
_RS17175
ABI39_RS17180: ABI39_RS17180 - phosphatase PAP2 family protein, at 4,345,299 to 4,346,006
_RS17180
ABI39_RS17185: ABI39_RS17185 - DNA-binding protein, at 4,346,136 to 4,346,404
_RS17185
Position (kb) 4344
4345
4346 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4343.555 kb on + strand, within ABI39_RS17170 at 4343.595 kb on + strand, within ABI39_RS17170 at 4343.739 kb on - strand, within ABI39_RS17170 at 4343.821 kb on - strand, within ABI39_RS17170 at 4344.010 kb on + strand, within ABI39_RS17170 at 4344.070 kb on - strand, within ABI39_RS17170 at 4344.190 kb on + strand, within ABI39_RS17170 at 4344.191 kb on - strand, within ABI39_RS17170 at 4344.268 kb on - strand at 4344.335 kb on + strand at 4344.336 kb on - strand at 4344.385 kb on - strand at 4344.395 kb on + strand at 4344.397 kb on + strand at 4344.626 kb on + strand, within ABI39_RS17175 at 4344.626 kb on + strand, within ABI39_RS17175 at 4344.628 kb on + strand, within ABI39_RS17175 at 4344.660 kb on + strand, within ABI39_RS17175 at 4344.661 kb on - strand, within ABI39_RS17175 at 4344.661 kb on - strand, within ABI39_RS17175 at 4344.662 kb on + strand, within ABI39_RS17175 at 4344.662 kb on + strand, within ABI39_RS17175 at 4344.663 kb on - strand, within ABI39_RS17175 at 4344.671 kb on - strand, within ABI39_RS17175 at 4344.739 kb on + strand, within ABI39_RS17175 at 4344.841 kb on - strand, within ABI39_RS17175 at 4344.928 kb on + strand, within ABI39_RS17175 at 4344.929 kb on - strand, within ABI39_RS17175 at 4345.105 kb on + strand, within ABI39_RS17175 at 4345.109 kb on - strand, within ABI39_RS17175 at 4345.109 kb on - strand, within ABI39_RS17175 at 4345.110 kb on + strand, within ABI39_RS17175 at 4345.306 kb on + strand at 4345.408 kb on + strand, within ABI39_RS17180 at 4345.435 kb on + strand, within ABI39_RS17180 at 4345.435 kb on + strand, within ABI39_RS17180 at 4345.438 kb on - strand, within ABI39_RS17180 at 4345.438 kb on - strand, within ABI39_RS17180 at 4345.488 kb on - strand, within ABI39_RS17180 at 4345.583 kb on + strand, within ABI39_RS17180 at 4345.588 kb on - strand, within ABI39_RS17180 at 4345.692 kb on - strand, within ABI39_RS17180 at 4345.755 kb on + strand, within ABI39_RS17180 at 4345.798 kb on + strand, within ABI39_RS17180 at 4345.813 kb on + strand, within ABI39_RS17180 at 4345.884 kb on - strand, within ABI39_RS17180 at 4345.890 kb on + strand, within ABI39_RS17180 at 4345.976 kb on + strand at 4346.131 kb on - strand at 4346.146 kb on + strand at 4346.154 kb on - strand at 4346.196 kb on - strand, within ABI39_RS17185
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,343,555 + ABI39_RS17170 0.51 -1.2 4,343,595 + ABI39_RS17170 0.53 -2.3 4,343,739 - ABI39_RS17170 0.61 -1.2 4,343,821 - ABI39_RS17170 0.66 -1.3 4,344,010 + ABI39_RS17170 0.76 -1.2 4,344,070 - ABI39_RS17170 0.79 +0.0 4,344,190 + ABI39_RS17170 0.86 -2.8 4,344,191 - ABI39_RS17170 0.86 -1.3 4,344,268 - -2.6 4,344,335 + -1.2 4,344,336 - -0.2 4,344,385 - +0.4 4,344,395 + -1.0 4,344,397 + -0.6 4,344,626 + ABI39_RS17175 0.19 -1.2 4,344,626 + ABI39_RS17175 0.19 -0.8 4,344,628 + ABI39_RS17175 0.19 -2.1 4,344,660 + ABI39_RS17175 0.23 -1.2 4,344,661 - ABI39_RS17175 0.23 -1.1 4,344,661 - ABI39_RS17175 0.23 -2.2 4,344,662 + ABI39_RS17175 0.23 -2.0 4,344,662 + ABI39_RS17175 0.23 -1.3 4,344,663 - ABI39_RS17175 0.24 -1.9 4,344,671 - ABI39_RS17175 0.25 -0.8 4,344,739 + ABI39_RS17175 0.33 -1.6 4,344,841 - ABI39_RS17175 0.45 -1.2 4,344,928 + ABI39_RS17175 0.56 -2.6 4,344,929 - ABI39_RS17175 0.56 -1.6 4,345,105 + ABI39_RS17175 0.78 -2.0 4,345,109 - ABI39_RS17175 0.78 -2.8 4,345,109 - ABI39_RS17175 0.78 -2.6 4,345,110 + ABI39_RS17175 0.78 -2.2 4,345,306 + +0.0 4,345,408 + ABI39_RS17180 0.15 +0.1 4,345,435 + ABI39_RS17180 0.19 -0.1 4,345,435 + ABI39_RS17180 0.19 -0.1 4,345,438 - ABI39_RS17180 0.20 -0.0 4,345,438 - ABI39_RS17180 0.20 +0.4 4,345,488 - ABI39_RS17180 0.27 +0.8 4,345,583 + ABI39_RS17180 0.40 -0.1 4,345,588 - ABI39_RS17180 0.41 -0.8 4,345,692 - ABI39_RS17180 0.56 -0.8 4,345,755 + ABI39_RS17180 0.64 +0.0 4,345,798 + ABI39_RS17180 0.70 +0.1 4,345,813 + ABI39_RS17180 0.73 -1.0 4,345,884 - ABI39_RS17180 0.83 -1.0 4,345,890 + ABI39_RS17180 0.83 +1.7 4,345,976 + +0.3 4,346,131 - -0.1 4,346,146 + +1.0 4,346,154 - +0.0 4,346,196 - ABI39_RS17185 0.22 -0.2
Or see this region's nucleotide sequence