Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01860 and ABI39_RS01865 are separated by 281 nucleotides ABI39_RS01865 and ABI39_RS01870 are separated by 124 nucleotides ABI39_RS01870 and ABI39_RS01875 are separated by 189 nucleotides
ABI39_RS01860: ABI39_RS01860 - hypothetical protein, at 550,187 to 551,158
_RS01860
ABI39_RS01865: ABI39_RS01865 - Gfo/Idh/MocA family oxidoreductase, at 551,440 to 552,855
_RS01865
ABI39_RS01870: ABI39_RS01870 - carbonic anhydrase, at 552,980 to 553,519
_RS01870
ABI39_RS01875: ABI39_RS01875 - Crp/Fnr family transcriptional regulator, at 553,709 to 554,293
_RS01875
Position (kb) 551
552
553 Strain fitness (log2 ratio) -1
0
1 at 550.471 kb on - strand, within ABI39_RS01860 at 550.634 kb on + strand, within ABI39_RS01860 at 550.699 kb on + strand, within ABI39_RS01860 at 550.740 kb on + strand, within ABI39_RS01860 at 550.783 kb on + strand, within ABI39_RS01860 at 550.822 kb on - strand, within ABI39_RS01860 at 550.883 kb on + strand, within ABI39_RS01860 at 550.975 kb on + strand, within ABI39_RS01860 at 551.277 kb on - strand at 551.289 kb on + strand at 551.410 kb on - strand at 551.420 kb on - strand at 551.458 kb on - strand at 551.598 kb on - strand, within ABI39_RS01865 at 551.600 kb on + strand, within ABI39_RS01865 at 551.840 kb on + strand, within ABI39_RS01865 at 551.887 kb on + strand, within ABI39_RS01865 at 551.888 kb on - strand, within ABI39_RS01865 at 552.042 kb on - strand, within ABI39_RS01865 at 552.094 kb on + strand, within ABI39_RS01865 at 552.095 kb on - strand, within ABI39_RS01865 at 552.095 kb on - strand, within ABI39_RS01865 at 552.178 kb on + strand, within ABI39_RS01865 at 552.178 kb on + strand, within ABI39_RS01865 at 552.298 kb on + strand, within ABI39_RS01865 at 552.383 kb on + strand, within ABI39_RS01865 at 552.383 kb on + strand, within ABI39_RS01865 at 552.420 kb on + strand, within ABI39_RS01865 at 552.421 kb on - strand, within ABI39_RS01865 at 552.476 kb on - strand, within ABI39_RS01865 at 552.595 kb on - strand, within ABI39_RS01865 at 552.675 kb on - strand, within ABI39_RS01865 at 552.722 kb on + strand at 552.896 kb on + strand at 552.933 kb on + strand at 553.037 kb on - strand, within ABI39_RS01870 at 553.037 kb on - strand, within ABI39_RS01870 at 553.153 kb on + strand, within ABI39_RS01870 at 553.208 kb on - strand, within ABI39_RS01870 at 553.211 kb on - strand, within ABI39_RS01870 at 553.253 kb on - strand, within ABI39_RS01870 at 553.269 kb on - strand, within ABI39_RS01870 at 553.276 kb on - strand, within ABI39_RS01870 at 553.276 kb on - strand, within ABI39_RS01870 at 553.412 kb on - strand, within ABI39_RS01870 at 553.412 kb on - strand, within ABI39_RS01870 at 553.459 kb on - strand, within ABI39_RS01870 at 553.553 kb on - strand at 553.642 kb on - strand at 553.769 kb on - strand, within ABI39_RS01875 at 553.806 kb on + strand, within ABI39_RS01875
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 550,471 - ABI39_RS01860 0.29 +0.2 550,634 + ABI39_RS01860 0.46 +0.1 550,699 + ABI39_RS01860 0.53 -0.1 550,740 + ABI39_RS01860 0.57 +0.3 550,783 + ABI39_RS01860 0.61 +0.3 550,822 - ABI39_RS01860 0.65 +0.4 550,883 + ABI39_RS01860 0.72 +0.3 550,975 + ABI39_RS01860 0.81 -0.3 551,277 - +0.3 551,289 + +0.4 551,410 - +0.3 551,420 - +0.2 551,458 - -0.1 551,598 - ABI39_RS01865 0.11 +0.2 551,600 + ABI39_RS01865 0.11 +0.5 551,840 + ABI39_RS01865 0.28 +0.3 551,887 + ABI39_RS01865 0.32 +0.2 551,888 - ABI39_RS01865 0.32 +0.2 552,042 - ABI39_RS01865 0.43 +0.3 552,094 + ABI39_RS01865 0.46 +0.4 552,095 - ABI39_RS01865 0.46 +0.4 552,095 - ABI39_RS01865 0.46 -0.0 552,178 + ABI39_RS01865 0.52 +0.1 552,178 + ABI39_RS01865 0.52 +0.4 552,298 + ABI39_RS01865 0.61 +0.1 552,383 + ABI39_RS01865 0.67 -0.9 552,383 + ABI39_RS01865 0.67 +0.4 552,420 + ABI39_RS01865 0.69 -0.0 552,421 - ABI39_RS01865 0.69 +0.3 552,476 - ABI39_RS01865 0.73 +0.2 552,595 - ABI39_RS01865 0.82 +0.1 552,675 - ABI39_RS01865 0.87 +0.2 552,722 + +0.2 552,896 + +0.2 552,933 + -0.6 553,037 - ABI39_RS01870 0.11 +0.1 553,037 - ABI39_RS01870 0.11 -0.1 553,153 + ABI39_RS01870 0.32 -0.6 553,208 - ABI39_RS01870 0.42 +0.0 553,211 - ABI39_RS01870 0.43 -0.1 553,253 - ABI39_RS01870 0.51 -0.3 553,269 - ABI39_RS01870 0.54 +0.4 553,276 - ABI39_RS01870 0.55 +0.5 553,276 - ABI39_RS01870 0.55 +0.1 553,412 - ABI39_RS01870 0.80 -0.1 553,412 - ABI39_RS01870 0.80 +0.5 553,459 - ABI39_RS01870 0.89 -0.1 553,553 - +0.1 553,642 - -0.3 553,769 - ABI39_RS01875 0.10 +0.2 553,806 + ABI39_RS01875 0.17 +0.1
Or see this region's nucleotide sequence