Experiment: Starch from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01650 and ABI39_RS01655 are separated by 9 nucleotides ABI39_RS01655 and ABI39_RS01660 are separated by 324 nucleotides
ABI39_RS01650: ABI39_RS01650 - methylmalonyl-CoA mutase small subunit, at 494,400 to 496,310
_RS01650
ABI39_RS01655: ABI39_RS01655 - methylmalonyl-CoA mutase, at 496,320 to 498,470
_RS01655
ABI39_RS01660: ABI39_RS01660 - RagB/SusD family nutrient uptake outer membrane protein, at 498,795 to 500,285
_RS01660
Position (kb) 496
497
498
499 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 495.506 kb on + strand, within ABI39_RS01650 at 495.559 kb on + strand, within ABI39_RS01650 at 495.583 kb on - strand, within ABI39_RS01650 at 496.109 kb on + strand, within ABI39_RS01650 at 496.131 kb on + strand at 496.145 kb on + strand at 496.165 kb on + strand at 496.341 kb on - strand at 496.346 kb on + strand at 496.348 kb on + strand at 496.348 kb on + strand at 496.348 kb on + strand at 496.348 kb on + strand at 496.349 kb on - strand at 496.349 kb on - strand at 496.434 kb on - strand at 496.488 kb on + strand at 496.488 kb on + strand at 496.696 kb on + strand, within ABI39_RS01655 at 496.709 kb on - strand, within ABI39_RS01655 at 496.709 kb on - strand, within ABI39_RS01655 at 496.930 kb on - strand, within ABI39_RS01655 at 496.972 kb on + strand, within ABI39_RS01655 at 496.980 kb on + strand, within ABI39_RS01655 at 497.012 kb on + strand, within ABI39_RS01655 at 497.013 kb on - strand, within ABI39_RS01655 at 497.073 kb on + strand, within ABI39_RS01655 at 497.216 kb on + strand, within ABI39_RS01655 at 497.348 kb on + strand, within ABI39_RS01655 at 497.454 kb on - strand, within ABI39_RS01655 at 497.521 kb on - strand, within ABI39_RS01655 at 497.524 kb on - strand, within ABI39_RS01655 at 497.636 kb on + strand, within ABI39_RS01655 at 497.825 kb on - strand, within ABI39_RS01655 at 497.983 kb on + strand, within ABI39_RS01655 at 498.173 kb on + strand, within ABI39_RS01655 at 498.239 kb on - strand, within ABI39_RS01655 at 498.270 kb on - strand at 498.291 kb on - strand at 498.329 kb on - strand at 498.329 kb on - strand at 498.391 kb on + strand at 498.507 kb on - strand at 498.528 kb on + strand at 498.581 kb on + strand at 498.653 kb on + strand at 498.764 kb on + strand at 498.784 kb on - strand at 498.794 kb on - strand at 498.794 kb on - strand at 498.800 kb on - strand at 498.822 kb on - strand at 498.840 kb on - strand at 498.900 kb on + strand at 498.992 kb on + strand, within ABI39_RS01660 at 499.042 kb on + strand, within ABI39_RS01660 at 499.042 kb on + strand, within ABI39_RS01660 at 499.043 kb on - strand, within ABI39_RS01660 at 499.113 kb on + strand, within ABI39_RS01660 at 499.282 kb on - strand, within ABI39_RS01660 at 499.320 kb on + strand, within ABI39_RS01660 at 499.370 kb on + strand, within ABI39_RS01660 at 499.371 kb on - strand, within ABI39_RS01660 at 499.372 kb on + strand, within ABI39_RS01660 at 499.426 kb on + strand, within ABI39_RS01660 at 499.426 kb on + strand, within ABI39_RS01660
Per-strain Table
Position Strand Gene LocusTag Fraction Starch from potato (C) remove 495,506 + ABI39_RS01650 0.58 -3.4 495,559 + ABI39_RS01650 0.61 -1.6 495,583 - ABI39_RS01650 0.62 -2.4 496,109 + ABI39_RS01650 0.89 -3.3 496,131 + -4.6 496,145 + -2.3 496,165 + -4.3 496,341 - -3.4 496,346 + -3.8 496,348 + -3.6 496,348 + -3.1 496,348 + -2.0 496,348 + -2.5 496,349 - -2.5 496,349 - -2.0 496,434 - -3.4 496,488 + -4.0 496,488 + -3.4 496,696 + ABI39_RS01655 0.17 -2.3 496,709 - ABI39_RS01655 0.18 -5.2 496,709 - ABI39_RS01655 0.18 -3.3 496,930 - ABI39_RS01655 0.28 -2.1 496,972 + ABI39_RS01655 0.30 -3.6 496,980 + ABI39_RS01655 0.31 -2.9 497,012 + ABI39_RS01655 0.32 -3.2 497,013 - ABI39_RS01655 0.32 -2.1 497,073 + ABI39_RS01655 0.35 -2.8 497,216 + ABI39_RS01655 0.42 -2.9 497,348 + ABI39_RS01655 0.48 -4.6 497,454 - ABI39_RS01655 0.53 -3.7 497,521 - ABI39_RS01655 0.56 -3.1 497,524 - ABI39_RS01655 0.56 -2.5 497,636 + ABI39_RS01655 0.61 -4.7 497,825 - ABI39_RS01655 0.70 -3.6 497,983 + ABI39_RS01655 0.77 -4.3 498,173 + ABI39_RS01655 0.86 -4.4 498,239 - ABI39_RS01655 0.89 -3.4 498,270 - -3.2 498,291 - -2.6 498,329 - -3.2 498,329 - -3.3 498,391 + -3.4 498,507 - +0.0 498,528 + +0.2 498,581 + -0.2 498,653 + +0.5 498,764 + +0.2 498,784 - +0.6 498,794 - +0.4 498,794 - -0.0 498,800 - -0.2 498,822 - -0.2 498,840 - -0.5 498,900 + -0.4 498,992 + ABI39_RS01660 0.13 -1.2 499,042 + ABI39_RS01660 0.17 -0.6 499,042 + ABI39_RS01660 0.17 -0.5 499,043 - ABI39_RS01660 0.17 -0.5 499,113 + ABI39_RS01660 0.21 -0.8 499,282 - ABI39_RS01660 0.33 +0.1 499,320 + ABI39_RS01660 0.35 -0.3 499,370 + ABI39_RS01660 0.39 +0.3 499,371 - ABI39_RS01660 0.39 -0.5 499,372 + ABI39_RS01660 0.39 -0.7 499,426 + ABI39_RS01660 0.42 +0.4 499,426 + ABI39_RS01660 0.42 +0.3
Or see this region's nucleotide sequence