Experiment: Starch from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01405 and ABI39_RS01410 are separated by 121 nucleotides ABI39_RS01410 and ABI39_RS01415 are separated by 17 nucleotides ABI39_RS01415 and ABI39_RS01420 are separated by 182 nucleotides ABI39_RS01420 and ABI39_RS01425 are separated by 8 nucleotides
ABI39_RS01405: ABI39_RS01405 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 428,741 to 429,499
_RS01405
ABI39_RS01410: ABI39_RS01410 - DUF975 family protein, at 429,621 to 430,247
_RS01410
ABI39_RS01415: ABI39_RS01415 - branched-chain amino acid aminotransferase, at 430,265 to 431,284
_RS01415
ABI39_RS01420: ABI39_RS01420 - exodeoxyribonuclease VII small subunit, at 431,467 to 431,670
_RS01420
ABI39_RS01425: ABI39_RS01425 - exodeoxyribonuclease VII large subunit, at 431,679 to 432,986
_RS01425
Position (kb) 430
431
432 Strain fitness (log2 ratio) -2
-1
0
1 at 429.270 kb on - strand, within ABI39_RS01405 at 429.276 kb on - strand, within ABI39_RS01405 at 429.304 kb on + strand, within ABI39_RS01405 at 429.304 kb on + strand, within ABI39_RS01405 at 429.617 kb on + strand at 429.622 kb on + strand at 429.696 kb on + strand, within ABI39_RS01410 at 429.696 kb on + strand, within ABI39_RS01410 at 429.697 kb on - strand, within ABI39_RS01410 at 429.795 kb on - strand, within ABI39_RS01410 at 429.939 kb on - strand, within ABI39_RS01410 at 429.939 kb on - strand, within ABI39_RS01410 at 429.940 kb on + strand, within ABI39_RS01410 at 429.941 kb on - strand, within ABI39_RS01410 at 430.053 kb on - strand, within ABI39_RS01410 at 430.121 kb on + strand, within ABI39_RS01410 at 430.289 kb on - strand at 430.294 kb on + strand at 430.372 kb on + strand, within ABI39_RS01415 at 430.378 kb on + strand, within ABI39_RS01415 at 430.511 kb on - strand, within ABI39_RS01415 at 430.722 kb on + strand, within ABI39_RS01415 at 430.784 kb on - strand, within ABI39_RS01415 at 430.787 kb on - strand, within ABI39_RS01415 at 430.894 kb on + strand, within ABI39_RS01415 at 430.916 kb on - strand, within ABI39_RS01415 at 431.084 kb on - strand, within ABI39_RS01415 at 431.215 kb on - strand at 431.290 kb on - strand at 431.303 kb on + strand at 431.360 kb on - strand at 431.421 kb on - strand at 431.421 kb on - strand at 431.421 kb on - strand at 431.435 kb on - strand at 431.435 kb on - strand at 431.694 kb on + strand at 431.795 kb on + strand at 431.795 kb on + strand at 431.795 kb on + strand at 431.795 kb on + strand at 431.796 kb on - strand at 432.042 kb on + strand, within ABI39_RS01425 at 432.089 kb on + strand, within ABI39_RS01425 at 432.090 kb on - strand, within ABI39_RS01425 at 432.153 kb on - strand, within ABI39_RS01425 at 432.158 kb on - strand, within ABI39_RS01425 at 432.191 kb on + strand, within ABI39_RS01425 at 432.246 kb on - strand, within ABI39_RS01425 at 432.248 kb on + strand, within ABI39_RS01425 at 432.249 kb on - strand, within ABI39_RS01425 at 432.249 kb on - strand, within ABI39_RS01425 at 432.254 kb on + strand, within ABI39_RS01425 at 432.272 kb on + strand, within ABI39_RS01425
Per-strain Table
Position Strand Gene LocusTag Fraction Starch from potato (C) remove 429,270 - ABI39_RS01405 0.70 +0.3 429,276 - ABI39_RS01405 0.70 +0.3 429,304 + ABI39_RS01405 0.74 -0.4 429,304 + ABI39_RS01405 0.74 -1.5 429,617 + +0.2 429,622 + -0.4 429,696 + ABI39_RS01410 0.12 +0.0 429,696 + ABI39_RS01410 0.12 -0.4 429,697 - ABI39_RS01410 0.12 -0.3 429,795 - ABI39_RS01410 0.28 -0.1 429,939 - ABI39_RS01410 0.51 +0.7 429,939 - ABI39_RS01410 0.51 +0.1 429,940 + ABI39_RS01410 0.51 -0.3 429,941 - ABI39_RS01410 0.51 -0.3 430,053 - ABI39_RS01410 0.69 -0.0 430,121 + ABI39_RS01410 0.80 +0.4 430,289 - -1.2 430,294 + -2.6 430,372 + ABI39_RS01415 0.10 -1.8 430,378 + ABI39_RS01415 0.11 +0.1 430,511 - ABI39_RS01415 0.24 -0.7 430,722 + ABI39_RS01415 0.45 -1.2 430,784 - ABI39_RS01415 0.51 +0.1 430,787 - ABI39_RS01415 0.51 -1.7 430,894 + ABI39_RS01415 0.62 -1.7 430,916 - ABI39_RS01415 0.64 +0.4 431,084 - ABI39_RS01415 0.80 -2.4 431,215 - -0.2 431,290 - -2.3 431,303 + -0.7 431,360 - -0.3 431,421 - -0.5 431,421 - +0.0 431,421 - +0.5 431,435 - -0.4 431,435 - -0.4 431,694 + -1.4 431,795 + -0.2 431,795 + -0.2 431,795 + -0.2 431,795 + -0.5 431,796 - +0.2 432,042 + ABI39_RS01425 0.28 +0.4 432,089 + ABI39_RS01425 0.31 +0.0 432,090 - ABI39_RS01425 0.31 +0.1 432,153 - ABI39_RS01425 0.36 -1.1 432,158 - ABI39_RS01425 0.37 -0.0 432,191 + ABI39_RS01425 0.39 +0.7 432,246 - ABI39_RS01425 0.43 +0.6 432,248 + ABI39_RS01425 0.44 +0.7 432,249 - ABI39_RS01425 0.44 -0.2 432,249 - ABI39_RS01425 0.44 -0.1 432,254 + ABI39_RS01425 0.44 -0.8 432,272 + ABI39_RS01425 0.45 -0.0
Or see this region's nucleotide sequence