Experiment: Starch from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00745 and ABI39_RS00750 are separated by 61 nucleotides ABI39_RS00750 and ABI39_RS00755 are separated by 203 nucleotides ABI39_RS00755 and ABI39_RS00760 are separated by 83 nucleotides ABI39_RS00760 and ABI39_RS00765 are separated by 2 nucleotides
ABI39_RS00745: ABI39_RS00745 - tRNA-Met, at 231,213 to 231,286
_RS00745
ABI39_RS00750: ABI39_RS00750 - tRNA-Met, at 231,348 to 231,421
_RS00750
ABI39_RS00755: ABI39_RS00755 - hypothetical protein, at 231,625 to 232,011
_RS00755
ABI39_RS00760: ABI39_RS00760 - YjgP/YjgQ family permease, at 232,095 to 233,993
_RS00760
ABI39_RS00765: ABI39_RS00765 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 233,996 to 235,210
_RS00765
Position (kb) 232
233
234 Strain fitness (log2 ratio) -1
0
1 at 231.146 kb on - strand at 231.195 kb on + strand at 231.195 kb on + strand at 231.266 kb on - strand, within ABI39_RS00745 at 231.337 kb on - strand at 231.509 kb on + strand at 231.530 kb on - strand at 231.653 kb on - strand at 231.683 kb on + strand, within ABI39_RS00755 at 231.683 kb on + strand, within ABI39_RS00755 at 231.683 kb on + strand, within ABI39_RS00755 at 231.684 kb on - strand, within ABI39_RS00755 at 231.693 kb on + strand, within ABI39_RS00755 at 231.755 kb on + strand, within ABI39_RS00755 at 231.756 kb on - strand, within ABI39_RS00755 at 231.826 kb on - strand, within ABI39_RS00755 at 231.887 kb on - strand, within ABI39_RS00755 at 231.909 kb on + strand, within ABI39_RS00755 at 231.909 kb on + strand, within ABI39_RS00755 at 231.910 kb on - strand, within ABI39_RS00755 at 232.009 kb on + strand at 233.507 kb on + strand, within ABI39_RS00760
Per-strain Table
Position Strand Gene LocusTag Fraction Starch from potato (C) remove 231,146 - -0.5 231,195 + -0.5 231,195 + -0.2 231,266 - ABI39_RS00745 0.72 +0.2 231,337 - -0.3 231,509 + -0.4 231,530 - -0.2 231,653 - -0.8 231,683 + ABI39_RS00755 0.15 -1.7 231,683 + ABI39_RS00755 0.15 -0.8 231,683 + ABI39_RS00755 0.15 -1.1 231,684 - ABI39_RS00755 0.15 -1.4 231,693 + ABI39_RS00755 0.18 -0.5 231,755 + ABI39_RS00755 0.34 -0.5 231,756 - ABI39_RS00755 0.34 -0.5 231,826 - ABI39_RS00755 0.52 -1.0 231,887 - ABI39_RS00755 0.68 -0.7 231,909 + ABI39_RS00755 0.73 -1.0 231,909 + ABI39_RS00755 0.73 -0.6 231,910 - ABI39_RS00755 0.74 -1.7 232,009 + +0.1 233,507 + ABI39_RS00760 0.74 -1.5
Or see this region's nucleotide sequence