Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_16710

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
3,666,053	+	nirB	OKGIIK_16705	0.32	-0.5
3,666,053	+	nirB	OKGIIK_16705	0.32	-1.6
3,666,071	+	nirB	OKGIIK_16705	0.34	-2.4
3,666,072	-	nirB	OKGIIK_16705	0.34	+0.5
3,666,224	+	nirB	OKGIIK_16705	0.47	-0.1
3,666,224	+	nirB	OKGIIK_16705	0.47	-1.9
3,666,225	-	nirB	OKGIIK_16705	0.47	+1.2
3,666,225	-	nirB	OKGIIK_16705	0.47	-1.1
3,666,225	-	nirB	OKGIIK_16705	0.47	+0.2
3,666,236	+	nirB	OKGIIK_16705	0.48	-1.1
3,666,236	+	nirB	OKGIIK_16705	0.48	-0.8
3,666,236	+	nirB	OKGIIK_16705	0.48	-0.3
3,666,236	+	nirB	OKGIIK_16705	0.48	-0.6
3,666,236	+	nirB	OKGIIK_16705	0.48	-0.1
3,666,236	+	nirB	OKGIIK_16705	0.48	-0.5
3,666,236	+	nirB	OKGIIK_16705	0.48	-0.8
3,666,236	+	nirB	OKGIIK_16705	0.48	-1.8
3,666,236	+	nirB	OKGIIK_16705	0.48	-2.6
3,666,236	+	nirB	OKGIIK_16705	0.48	-1.1
3,666,236	+	nirB	OKGIIK_16705	0.48	-0.5
3,666,236	+	nirB	OKGIIK_16705	0.48	-0.6
3,666,236	+	nirB	OKGIIK_16705	0.48	-1.5
3,666,237	-	nirB	OKGIIK_16705	0.48	+0.5
3,666,237	-	nirB	OKGIIK_16705	0.48	-2.7
3,666,237	-	nirB	OKGIIK_16705	0.48	-1.1
3,666,237	-	nirB	OKGIIK_16705	0.48	-0.3
3,666,237	-	nirB	OKGIIK_16705	0.48	-1.8
3,666,240	-	nirB	OKGIIK_16705	0.48	-0.5
3,666,240	-	nirB	OKGIIK_16705	0.48	+0.8
3,666,240	-	nirB	OKGIIK_16705	0.48	-2.3
3,666,463	+	nirB	OKGIIK_16705	0.67	+0.7
3,666,463	+	nirB	OKGIIK_16705	0.67	-0.5
3,666,494	+	nirB	OKGIIK_16705	0.69	-0.3
3,666,494	+	nirB	OKGIIK_16705	0.69	+0.2
3,666,494	+	nirB	OKGIIK_16705	0.69	-0.1
3,666,494	+	nirB	OKGIIK_16705	0.69	-0.4
3,666,494	+	nirB	OKGIIK_16705	0.69	-0.8
3,666,494	+	nirB	OKGIIK_16705	0.69	-0.5
3,666,494	+	nirB	OKGIIK_16705	0.69	-1.3
3,666,495	-	nirB	OKGIIK_16705	0.69	-0.8
3,666,495	-	nirB	OKGIIK_16705	0.69	-1.2
3,666,495	-	nirB	OKGIIK_16705	0.69	-1.5
3,666,495	-	nirB	OKGIIK_16705	0.69	-0.8
3,666,495	-	nirB	OKGIIK_16705	0.69	-1.5
3,666,596	+	nirB	OKGIIK_16705	0.78	-0.5
3,666,596	+	nirB	OKGIIK_16705	0.78	-1.6
3,666,596	+	nirB	OKGIIK_16705	0.78	-0.5
3,666,596	+	nirB	OKGIIK_16705	0.78	-1.0
3,666,596	+	nirB	OKGIIK_16705	0.78	-1.8
3,666,596	+	nirB	OKGIIK_16705	0.78	+1.1
3,666,596	+	nirB	OKGIIK_16705	0.78	-0.1
3,666,596	+	nirB	OKGIIK_16705	0.78	-0.9
3,666,596	+	nirB	OKGIIK_16705	0.78	+0.2
3,666,596	+	nirB	OKGIIK_16705	0.78	-0.8
3,666,596	+	nirB	OKGIIK_16705	0.78	-0.5
3,666,596	+	nirB	OKGIIK_16705	0.78	-0.5
3,666,596	+	nirB	OKGIIK_16705	0.78	-0.8
3,666,597	-	nirB	OKGIIK_16705	0.78	+0.9
3,666,597	-	nirB	OKGIIK_16705	0.78	+0.3
3,666,597	-	nirB	OKGIIK_16705	0.78	-0.5
3,666,597	-	nirB	OKGIIK_16705	0.78	-0.5
3,666,597	-	nirB	OKGIIK_16705	0.78	-0.8
3,666,597	-	nirB	OKGIIK_16705	0.78	-1.0
3,666,597	-	nirB	OKGIIK_16705	0.78	-1.6
3,666,597	-	nirB	OKGIIK_16705	0.78	-0.8
3,666,597	-	nirB	OKGIIK_16705	0.78	-1.5
3,666,597	-	nirB	OKGIIK_16705	0.78	-1.1
3,666,597	-	nirB	OKGIIK_16705	0.78	-0.5
3,666,597	-	nirB	OKGIIK_16705	0.78	-0.3
3,666,597	-	nirB	OKGIIK_16705	0.78	-1.6
3,666,597	-	nirB	OKGIIK_16705	0.78	-1.9
3,666,597	-	nirB	OKGIIK_16705	0.78	-1.1
3,666,597	-	nirB	OKGIIK_16705	0.78	-0.3
3,666,597	-	nirB	OKGIIK_16705	0.78	-0.5
3,666,617	+	nirB	OKGIIK_16705	0.80	-0.2
3,666,617	+	nirB	OKGIIK_16705	0.80	-2.9
3,666,617	+	nirB	OKGIIK_16705	0.80	-1.1
3,666,618	-	nirB	OKGIIK_16705	0.80	-1.3
3,666,618	-	nirB	OKGIIK_16705	0.80	+0.4
3,666,618	-	nirB	OKGIIK_16705	0.80	-0.5
3,666,618	-	nirB	OKGIIK_16705	0.80	-0.9
3,666,618	-	nirB	OKGIIK_16705	0.80	-2.7
3,666,618	-	nirB	OKGIIK_16705	0.80	-0.5
3,666,618	-	nirB	OKGIIK_16705	0.80	-1.5
3,666,618	-	nirB	OKGIIK_16705	0.80	-0.8
3,666,641	+	nirB	OKGIIK_16705	0.82	-0.5
3,666,642	-	nirB	OKGIIK_16705	0.82	-1.5
3,666,664	+	nirB	OKGIIK_16705	0.84	-1.3
3,666,664	+	nirB	OKGIIK_16705	0.84	+0.5
3,666,665	-	nirB	OKGIIK_16705	0.84	-1.9
3,666,665	-	nirB	OKGIIK_16705	0.84	-0.1
3,666,719	+	nirB	OKGIIK_16705	0.88	-1.6
3,666,719	+	nirB	OKGIIK_16705	0.88	-2.2
3,666,719	+	nirB	OKGIIK_16705	0.88	+0.8
3,666,719	+	nirB	OKGIIK_16705	0.88	-0.3
3,666,719	+	nirB	OKGIIK_16705	0.88	-0.8
3,666,719	+	nirB	OKGIIK_16705	0.88	-1.9
3,666,719	+	nirB	OKGIIK_16705	0.88	-0.8
3,666,719	+	nirB	OKGIIK_16705	0.88	-0.4
3,666,719	+	nirB	OKGIIK_16705	0.88	-2.7
3,666,719	+	nirB	OKGIIK_16705	0.88	-1.5
3,666,719	+	nirB	OKGIIK_16705	0.88	-0.8
3,666,719	+	nirB	OKGIIK_16705	0.88	-0.1
3,666,719	+	nirB	OKGIIK_16705	0.88	-1.1
3,666,719	+	nirB	OKGIIK_16705	0.88	-0.5
3,666,720	-	nirB	OKGIIK_16705	0.88	-2.4
3,666,720	-	nirB	OKGIIK_16705	0.88	-1.5
3,666,720	-	nirB	OKGIIK_16705	0.88	-0.5
3,666,720	-	nirB	OKGIIK_16705	0.88	-1.1
3,666,720	-	nirB	OKGIIK_16705	0.88	-0.8
3,666,720	-	nirB	OKGIIK_16705	0.88	-0.5
3,666,720	-	nirB	OKGIIK_16705	0.88	+0.4
3,666,720	-	nirB	OKGIIK_16705	0.88	-1.1
3,666,720	-	nirB	OKGIIK_16705	0.88	-1.6
3,666,720	-	nirB	OKGIIK_16705	0.88	-1.8
3,666,720	-	nirB	OKGIIK_16705	0.88	-0.5
3,666,720	-	nirB	OKGIIK_16705	0.88	-0.5
3,666,720	-	nirB	OKGIIK_16705	0.88	-1.0
3,666,720	-	nirB	OKGIIK_16705	0.88	-1.3
3,666,720	-	nirB	OKGIIK_16705	0.88	-0.3
3,666,720	-	nirB	OKGIIK_16705	0.88	+0.8
3,666,720	-	nirB	OKGIIK_16705	0.88	-0.7
3,666,720	-	nirB	OKGIIK_16705	0.88	-0.5
3,666,722	+	nirB	OKGIIK_16705	0.88	-1.3
3,666,722	+	nirB	OKGIIK_16705	0.88	-1.7
3,666,722	+	nirB	OKGIIK_16705	0.88	-1.8
3,666,723	-	nirB	OKGIIK_16705	0.89	-0.1
3,666,723	-	nirB	OKGIIK_16705	0.89	-0.3
3,666,723	-	nirB	OKGIIK_16705	0.89	-2.3
3,666,723	-	nirB	OKGIIK_16705	0.89	-0.7
3,666,723	-	nirB	OKGIIK_16705	0.89	-0.1
3,666,723	-	nirB	OKGIIK_16705	0.89	-0.6
3,666,857	+				-0.1
3,666,858	-				+2.3
3,666,912	-				-1.3
3,666,912	-				-0.3
3,666,956	+				-0.8
3,666,956	+				-1.8
3,666,956	+				-0.2
3,666,956	+				-0.5
3,666,987	+				+0.3
3,666,987	+				-0.6
3,666,987	+				-1.1
3,666,987	+				-0.8
3,666,987	+				+0.5
3,666,987	+				-0.6
3,666,987	+				-2.4
3,666,988	-				-3.0
3,667,059	+				+1.0
3,667,266	+	rlmK	OKGIIK_16710	0.20	-0.9
3,667,266	+	rlmK	OKGIIK_16710	0.20	+0.5
3,667,266	+	rlmK	OKGIIK_16710	0.20	-1.4
3,667,267	-	rlmK	OKGIIK_16710	0.20	-2.3
3,667,267	-	rlmK	OKGIIK_16710	0.20	-0.8
3,667,267	-	rlmK	OKGIIK_16710	0.20	-0.3
3,667,339	-	rlmK	OKGIIK_16710	0.27	-0.8
3,667,339	-	rlmK	OKGIIK_16710	0.27	+2.1
3,667,734	+	rlmK	OKGIIK_16710	0.60	-0.8
3,667,734	+	rlmK	OKGIIK_16710	0.60	-1.1
3,667,735	-	rlmK	OKGIIK_16710	0.60	-0.5
3,667,812	+	rlmK	OKGIIK_16710	0.67	-1.5
3,667,812	+	rlmK	OKGIIK_16710	0.67	-1.1
3,667,812	+	rlmK	OKGIIK_16710	0.67	-1.6
3,667,812	+	rlmK	OKGIIK_16710	0.67	+0.9
3,667,812	+	rlmK	OKGIIK_16710	0.67	-1.1
3,667,812	+	rlmK	OKGIIK_16710	0.67	-0.1
3,667,813	-	rlmK	OKGIIK_16710	0.67	-1.5
3,667,813	-	rlmK	OKGIIK_16710	0.67	-0.5
3,667,813	-	rlmK	OKGIIK_16710	0.67	-1.6
3,667,813	-	rlmK	OKGIIK_16710	0.67	-1.6
3,668,132	+				-0.8
3,668,132	+				-1.1
3,668,132	+				-1.5
3,668,133	-				-1.6
3,668,133	-				-0.5
3,668,133	-				-1.8
3,668,133	-				-0.6
3,668,133	-				-0.5
3,668,192	+				-0.8
3,668,192	+				-1.1
3,668,192	+				-1.6
3,668,192	+				-3.2
3,668,192	+				-0.5
3,668,192	+				-0.5
3,668,192	+				-1.9
3,668,192	+				-0.4
3,668,193	-				-0.5
3,668,193	-				-0.4
3,668,193	-				-0.5
3,668,211	+				+1.5
3,668,488	+		OKGIIK_16715	0.34	-0.8
3,668,488	+		OKGIIK_16715	0.34	+1.5
3,668,488	+		OKGIIK_16715	0.34	+0.0
3,668,488	+		OKGIIK_16715	0.34	-0.5
3,668,488	+		OKGIIK_16715	0.34	-1.2
3,668,488	+		OKGIIK_16715	0.34	-0.3
3,668,488	+		OKGIIK_16715	0.34	+0.4
3,668,488	+		OKGIIK_16715	0.34	-1.6
3,668,488	+		OKGIIK_16715	0.34	-0.8
3,668,488	+		OKGIIK_16715	0.34	-1.6
3,668,489	-		OKGIIK_16715	0.34	+0.9
3,668,489	-		OKGIIK_16715	0.34	-1.6
3,668,489	-		OKGIIK_16715	0.34	-1.5
3,668,489	-		OKGIIK_16715	0.34	-2.1
3,668,489	-		OKGIIK_16715	0.34	-1.3
3,668,489	-		OKGIIK_16715	0.34	-0.1
3,668,489	-		OKGIIK_16715	0.34	-0.8
3,668,489	-		OKGIIK_16715	0.34	-0.5
3,668,521	+		OKGIIK_16715	0.41	+0.2
3,668,521	+		OKGIIK_16715	0.41	-0.1
3,668,521	+		OKGIIK_16715	0.41	-0.9
3,668,521	+		OKGIIK_16715	0.41	+1.1
3,668,521	+		OKGIIK_16715	0.41	-1.4
3,668,521	+		OKGIIK_16715	0.41	-1.1
3,668,521	+		OKGIIK_16715	0.41	-0.5
3,668,521	+		OKGIIK_16715	0.41	-0.1
3,668,522	-		OKGIIK_16715	0.42	-1.7
3,668,522	-		OKGIIK_16715	0.42	-1.9
3,668,522	-		OKGIIK_16715	0.42	-0.6
3,668,522	-		OKGIIK_16715	0.42	-1.8
3,668,628	+		OKGIIK_16715	0.66	-0.1
3,668,629	-		OKGIIK_16715	0.66	-0.5
3,668,629	-		OKGIIK_16715	0.66	-1.5
3,668,638	+		OKGIIK_16715	0.68	-0.9
3,668,638	+		OKGIIK_16715	0.68	-0.1
3,668,638	+		OKGIIK_16715	0.68	-0.9
3,668,638	+		OKGIIK_16715	0.68	-1.9
3,668,638	+		OKGIIK_16715	0.68	-2.1
3,668,638	+		OKGIIK_16715	0.68	-0.3
3,668,638	+		OKGIIK_16715	0.68	-1.7
3,668,638	+		OKGIIK_16715	0.68	-0.5
3,668,639	-		OKGIIK_16715	0.68	-2.3
3,668,639	-		OKGIIK_16715	0.68	-1.5
3,668,639	-		OKGIIK_16715	0.68	-0.9
3,668,716	-		OKGIIK_16715	0.86	-1.4
3,668,722	+		OKGIIK_16715	0.87	-0.5
3,668,722	+		OKGIIK_16715	0.87	-0.5
3,668,722	+		OKGIIK_16715	0.87	+1.3
3,668,723	-		OKGIIK_16715	0.87	-0.5
3,668,806	+				-1.4
3,668,806	+				-0.6
3,668,807	-				-1.6
3,669,011	+	gsp	OKGIIK_16720	0.12	+0.2
3,669,011	+	gsp	OKGIIK_16720	0.12	-0.9
3,669,012	-	gsp	OKGIIK_16720	0.12	-0.5
3,669,072	-	gsp	OKGIIK_16720	0.17	+0.2