Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_16555

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
3,636,601	-	ctaA	OKGIIK_16550	0.18	-1.9
3,636,601	-	ctaA	OKGIIK_16550	0.18	+0.1
3,636,762	+	ctaA	OKGIIK_16550	0.31	-0.6
3,636,762	+	ctaA	OKGIIK_16550	0.31	-0.9
3,636,762	+	ctaA	OKGIIK_16550	0.31	-1.9
3,636,762	+	ctaA	OKGIIK_16550	0.31	-1.1
3,636,762	+	ctaA	OKGIIK_16550	0.31	-1.3
3,636,762	+	ctaA	OKGIIK_16550	0.31	-1.4
3,636,762	+	ctaA	OKGIIK_16550	0.31	+0.3
3,636,762	+	ctaA	OKGIIK_16550	0.31	-0.7
3,636,762	+	ctaA	OKGIIK_16550	0.31	+0.3
3,636,762	+	ctaA	OKGIIK_16550	0.31	-1.0
3,636,762	+	ctaA	OKGIIK_16550	0.31	-2.1
3,636,762	+	ctaA	OKGIIK_16550	0.31	-2.3
3,636,762	+	ctaA	OKGIIK_16550	0.31	+0.7
3,636,762	+	ctaA	OKGIIK_16550	0.31	-0.8
3,636,762	+	ctaA	OKGIIK_16550	0.31	+0.3
3,636,762	+	ctaA	OKGIIK_16550	0.31	-0.6
3,636,762	+	ctaA	OKGIIK_16550	0.31	-0.3
3,636,762	+	ctaA	OKGIIK_16550	0.31	-0.9
3,636,762	+	ctaA	OKGIIK_16550	0.31	-1.4
3,636,762	+	ctaA	OKGIIK_16550	0.31	-1.0
3,636,762	+	ctaA	OKGIIK_16550	0.31	+0.6
3,636,762	+	ctaA	OKGIIK_16550	0.31	-0.4
3,636,762	+	ctaA	OKGIIK_16550	0.31	-1.6
3,636,762	+	ctaA	OKGIIK_16550	0.31	-0.1
3,636,762	+	ctaA	OKGIIK_16550	0.31	-1.1
3,636,763	-	ctaA	OKGIIK_16550	0.31	-1.1
3,636,763	-	ctaA	OKGIIK_16550	0.31	+0.6
3,636,763	-	ctaA	OKGIIK_16550	0.31	-0.7
3,636,763	-	ctaA	OKGIIK_16550	0.31	-0.9
3,636,763	-	ctaA	OKGIIK_16550	0.31	-1.1
3,636,763	-	ctaA	OKGIIK_16550	0.31	-2.1
3,636,763	-	ctaA	OKGIIK_16550	0.31	-0.1
3,636,763	-	ctaA	OKGIIK_16550	0.31	-2.2
3,636,996	+	ctaA	OKGIIK_16550	0.51	-1.2
3,636,996	+	ctaA	OKGIIK_16550	0.51	-0.9
3,636,997	-	ctaA	OKGIIK_16550	0.51	-1.7
3,636,997	-	ctaA	OKGIIK_16550	0.51	-2.2
3,637,125	+	ctaA	OKGIIK_16550	0.62	-1.4
3,637,125	+	ctaA	OKGIIK_16550	0.62	-1.3
3,637,125	+	ctaA	OKGIIK_16550	0.62	+1.0
3,637,125	+	ctaA	OKGIIK_16550	0.62	-1.2
3,637,125	+	ctaA	OKGIIK_16550	0.62	-1.1
3,637,126	-	ctaA	OKGIIK_16550	0.62	-1.9
3,637,126	-	ctaA	OKGIIK_16550	0.62	-1.8
3,637,126	-	ctaA	OKGIIK_16550	0.62	+0.0
3,637,242	+	ctaA	OKGIIK_16550	0.72	+0.3
3,637,242	+	ctaA	OKGIIK_16550	0.72	-1.1
3,637,242	+	ctaA	OKGIIK_16550	0.72	+0.8
3,637,242	+	ctaA	OKGIIK_16550	0.72	-2.1
3,637,242	+	ctaA	OKGIIK_16550	0.72	-0.7
3,637,242	+	ctaA	OKGIIK_16550	0.72	+1.5
3,637,242	+	ctaA	OKGIIK_16550	0.72	+0.3
3,637,242	+	ctaA	OKGIIK_16550	0.72	-0.9
3,637,242	+	ctaA	OKGIIK_16550	0.72	-0.6
3,637,243	-	ctaA	OKGIIK_16550	0.72	-1.1
3,637,243	-	ctaA	OKGIIK_16550	0.72	-1.0
3,637,243	-	ctaA	OKGIIK_16550	0.72	-1.4
3,637,243	-	ctaA	OKGIIK_16550	0.72	-0.3
3,637,243	-	ctaA	OKGIIK_16550	0.72	-0.6
3,637,243	-	ctaA	OKGIIK_16550	0.72	+0.4
3,637,323	+	ctaA	OKGIIK_16550	0.79	+0.3
3,637,323	+	ctaA	OKGIIK_16550	0.79	-0.2
3,637,323	+	ctaA	OKGIIK_16550	0.79	+0.1
3,637,324	-	ctaA	OKGIIK_16550	0.79	-0.7
3,637,324	-	ctaA	OKGIIK_16550	0.79	-0.9
3,637,431	+	ctaA	OKGIIK_16550	0.88	-1.0
3,637,431	+	ctaA	OKGIIK_16550	0.88	-1.6
3,637,431	+	ctaA	OKGIIK_16550	0.88	+1.8
3,637,431	+	ctaA	OKGIIK_16550	0.88	-1.6
3,637,431	+	ctaA	OKGIIK_16550	0.88	+1.0
3,637,431	+	ctaA	OKGIIK_16550	0.88	-1.0
3,637,431	+	ctaA	OKGIIK_16550	0.88	-1.2
3,637,431	+	ctaA	OKGIIK_16550	0.88	+1.3
3,637,431	+	ctaA	OKGIIK_16550	0.88	+0.1
3,637,431	+	ctaA	OKGIIK_16550	0.88	-0.7
3,637,431	+	ctaA	OKGIIK_16550	0.88	-0.3
3,637,432	-	ctaA	OKGIIK_16550	0.88	+0.4
3,637,432	-	ctaA	OKGIIK_16550	0.88	-2.9
3,637,432	-	ctaA	OKGIIK_16550	0.88	-1.4
3,637,589	+				+0.3
3,637,589	+				-0.7
3,637,589	+				-0.5
3,637,589	+				+0.7
3,637,589	+				-0.3
3,637,589	+				-0.6
3,637,589	+				-0.1
3,637,589	+				+0.4
3,637,589	+				+1.1
3,637,589	+				-1.7
3,637,589	+				+0.3
3,637,589	+				-0.7
3,637,589	+				-1.4
3,637,589	+				+0.1
3,637,589	+				-0.5
3,637,589	+				-0.7
3,637,589	+				-1.0
3,637,589	+				-0.1
3,637,589	+				-1.2
3,637,589	+				+0.3
3,637,590	-				+0.5
3,637,590	-				-0.8
3,637,590	-				-0.4
3,637,590	-				-0.6
3,637,590	-				-0.3
3,637,590	-				-0.4
3,637,590	-				+1.3
3,637,590	-				-1.2
3,637,590	-				-0.1
3,637,590	-				-0.5
3,637,590	-				+0.3
3,637,932	-	cyoE	OKGIIK_16555	0.40	-0.1
3,637,932	-	cyoE	OKGIIK_16555	0.40	-1.7
3,637,943	+	cyoE	OKGIIK_16555	0.41	-1.6
3,637,943	+	cyoE	OKGIIK_16555	0.41	-1.9
3,637,943	+	cyoE	OKGIIK_16555	0.41	-2.5
3,637,943	+	cyoE	OKGIIK_16555	0.41	-0.6
3,637,943	+	cyoE	OKGIIK_16555	0.41	-1.7
3,637,943	+	cyoE	OKGIIK_16555	0.41	+0.3
3,637,943	+	cyoE	OKGIIK_16555	0.41	-1.7
3,637,943	+	cyoE	OKGIIK_16555	0.41	-0.1
3,637,943	+	cyoE	OKGIIK_16555	0.41	-1.2
3,637,944	-	cyoE	OKGIIK_16555	0.41	+1.3
3,637,944	-	cyoE	OKGIIK_16555	0.41	+1.3
3,637,944	-	cyoE	OKGIIK_16555	0.41	-0.9
3,637,944	-	cyoE	OKGIIK_16555	0.41	-0.9
3,637,944	-	cyoE	OKGIIK_16555	0.41	-1.0
3,637,944	-	cyoE	OKGIIK_16555	0.41	+1.4
3,637,944	-	cyoE	OKGIIK_16555	0.41	-3.3
3,637,944	-	cyoE	OKGIIK_16555	0.41	+1.4
3,637,944	-	cyoE	OKGIIK_16555	0.41	-1.1
3,637,944	-	cyoE	OKGIIK_16555	0.41	-2.0
3,637,944	-	cyoE	OKGIIK_16555	0.41	-0.3
3,637,944	-	cyoE	OKGIIK_16555	0.41	-1.2
3,638,054	+	cyoE	OKGIIK_16555	0.53	-1.0
3,638,054	+	cyoE	OKGIIK_16555	0.53	-1.4
3,638,055	-	cyoE	OKGIIK_16555	0.54	+1.3
3,638,135	+	cyoE	OKGIIK_16555	0.62	+0.3
3,638,136	-	cyoE	OKGIIK_16555	0.63	-2.1
3,638,136	-	cyoE	OKGIIK_16555	0.63	-1.3
3,638,136	-	cyoE	OKGIIK_16555	0.63	-1.3
3,638,207	+	cyoE	OKGIIK_16555	0.70	+0.4
3,638,207	+	cyoE	OKGIIK_16555	0.70	-0.3
3,638,207	+	cyoE	OKGIIK_16555	0.70	+0.7
3,638,207	+	cyoE	OKGIIK_16555	0.70	+1.3
3,638,207	+	cyoE	OKGIIK_16555	0.70	+0.3
3,638,207	+	cyoE	OKGIIK_16555	0.70	-0.3
3,638,207	+	cyoE	OKGIIK_16555	0.70	-0.6
3,638,207	+	cyoE	OKGIIK_16555	0.70	-0.5
3,638,208	-	cyoE	OKGIIK_16555	0.71	-1.7
3,638,208	-	cyoE	OKGIIK_16555	0.71	-2.5
3,638,270	+	cyoE	OKGIIK_16555	0.77	-0.1
3,638,270	+	cyoE	OKGIIK_16555	0.77	-1.0
3,638,270	+	cyoE	OKGIIK_16555	0.77	-1.2
3,638,270	+	cyoE	OKGIIK_16555	0.77	-0.3
3,638,271	-	cyoE	OKGIIK_16555	0.78	-1.2
3,638,271	-	cyoE	OKGIIK_16555	0.78	+0.7
3,638,309	+	cyoE	OKGIIK_16555	0.82	-0.8
3,638,309	+	cyoE	OKGIIK_16555	0.82	-0.1
3,638,309	+	cyoE	OKGIIK_16555	0.82	-0.2
3,638,309	+	cyoE	OKGIIK_16555	0.82	-1.8
3,638,309	+	cyoE	OKGIIK_16555	0.82	-1.4
3,638,309	+	cyoE	OKGIIK_16555	0.82	-0.3
3,638,310	-	cyoE	OKGIIK_16555	0.82	-0.1
3,638,310	-	cyoE	OKGIIK_16555	0.82	-1.2
3,638,310	-	cyoE	OKGIIK_16555	0.82	+1.7
3,638,310	-	cyoE	OKGIIK_16555	0.82	-1.6
3,638,310	-	cyoE	OKGIIK_16555	0.82	-1.4
3,638,312	+	cyoE	OKGIIK_16555	0.82	+1.1
3,638,312	+	cyoE	OKGIIK_16555	0.82	+1.1
3,638,312	+	cyoE	OKGIIK_16555	0.82	-0.4
3,638,313	-	cyoE	OKGIIK_16555	0.82	-1.4
3,638,313	-	cyoE	OKGIIK_16555	0.82	-2.5
3,638,348	+	cyoE	OKGIIK_16555	0.86	-2.2
3,638,348	+	cyoE	OKGIIK_16555	0.86	-1.1
3,638,348	+	cyoE	OKGIIK_16555	0.86	-2.1
3,638,349	-	cyoE	OKGIIK_16555	0.86	+0.9
3,638,349	-	cyoE	OKGIIK_16555	0.86	+0.7
3,638,349	-	cyoE	OKGIIK_16555	0.86	-0.7
3,638,349	-	cyoE	OKGIIK_16555	0.86	-1.2
3,638,349	-	cyoE	OKGIIK_16555	0.86	-0.1
3,638,369	+	cyoE	OKGIIK_16555	0.88	-0.3
3,638,369	+	cyoE	OKGIIK_16555	0.88	-2.4
3,638,369	+	cyoE	OKGIIK_16555	0.88	-1.1
3,638,369	+	cyoE	OKGIIK_16555	0.88	-2.2
3,638,369	+	cyoE	OKGIIK_16555	0.88	-1.3
3,638,370	-	cyoE	OKGIIK_16555	0.88	-2.3
3,638,370	-	cyoE	OKGIIK_16555	0.88	-1.1
3,638,370	-	cyoE	OKGIIK_16555	0.88	-2.2
3,638,370	-	cyoE	OKGIIK_16555	0.88	-1.9
3,638,370	-	cyoE	OKGIIK_16555	0.88	-0.1
3,638,370	-	cyoE	OKGIIK_16555	0.88	-0.6
3,638,370	-	cyoE	OKGIIK_16555	0.88	-1.3
3,638,370	-	cyoE	OKGIIK_16555	0.88	+0.3
3,638,370	-	cyoE	OKGIIK_16555	0.88	-2.5
3,638,381	+	cyoE	OKGIIK_16555	0.90	-0.7
3,638,381	+	cyoE	OKGIIK_16555	0.90	-1.0
3,638,381	+	cyoE	OKGIIK_16555	0.90	-0.7
3,638,382	-	cyoE	OKGIIK_16555	0.90	-0.9
3,638,382	-	cyoE	OKGIIK_16555	0.90	+0.5
3,638,609	+				-2.3
3,638,620	+				-1.7
3,638,620	+				-1.2
3,638,620	+				-0.7
3,638,620	+				-0.6
3,638,620	+				-0.7
3,638,620	+				-0.9
3,638,621	-				-0.1
3,638,621	-				+0.4
3,638,621	-				+0.9
3,638,621	-				-0.9
3,638,621	-				+0.3
3,638,621	-				-0.1
3,638,621	-				+1.0
3,638,630	+				+0.3
3,638,631	-				-0.7
3,638,631	-				+0.3
3,638,631	-				+1.1
3,638,631	-				-0.9
3,638,631	-				-1.2
3,638,635	+				-1.2
3,638,635	+				+0.9
3,638,681	-				-0.6
3,638,735	+				-0.1
3,638,776	+				-0.7
3,638,874	+		OKGIIK_16560	0.33	-1.4
3,638,874	+		OKGIIK_16560	0.33	+0.2
3,638,874	+		OKGIIK_16560	0.33	+1.5
3,638,874	+		OKGIIK_16560	0.33	+1.3
3,638,874	+		OKGIIK_16560	0.33	-0.5
3,638,874	+		OKGIIK_16560	0.33	+0.4
3,638,874	+		OKGIIK_16560	0.33	-0.9
3,638,874	+		OKGIIK_16560	0.33	+1.1
3,638,874	+		OKGIIK_16560	0.33	-0.2
3,638,874	+		OKGIIK_16560	0.33	-0.7
3,638,874	+		OKGIIK_16560	0.33	+0.1
3,638,874	+		OKGIIK_16560	0.33	-1.7
3,638,874	+		OKGIIK_16560	0.33	+0.3
3,638,875	-		OKGIIK_16560	0.34	-0.3
3,638,875	-		OKGIIK_16560	0.34	+0.2
3,638,875	-		OKGIIK_16560	0.34	+0.3
3,639,022	+				-0.3
3,639,023	-				-1.1
3,639,167	-				-0.3
3,639,167	-				+0.3