Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_15925

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
3,479,211	+		OKGIIK_15920	0.24	+0.1
3,479,211	+		OKGIIK_15920	0.24	-0.3
3,479,211	+		OKGIIK_15920	0.24	-0.3
3,479,212	-		OKGIIK_15920	0.24	-0.5
3,479,212	-		OKGIIK_15920	0.24	-1.0
3,479,212	-		OKGIIK_15920	0.24	-0.3
3,479,212	-		OKGIIK_15920	0.24	+0.7
3,479,243	+		OKGIIK_15920	0.28	+1.6
3,479,244	-		OKGIIK_15920	0.29	+0.5
3,479,244	-		OKGIIK_15920	0.29	+0.9
3,479,289	+		OKGIIK_15920	0.35	-0.5
3,479,289	+		OKGIIK_15920	0.35	-0.3
3,479,289	+		OKGIIK_15920	0.35	+0.4
3,479,290	-		OKGIIK_15920	0.35	+0.3
3,479,290	-		OKGIIK_15920	0.35	+0.9
3,479,290	-		OKGIIK_15920	0.35	+0.0
3,479,290	-		OKGIIK_15920	0.35	-0.7
3,479,290	-		OKGIIK_15920	0.35	-0.4
3,479,290	-		OKGIIK_15920	0.35	-2.6
3,479,304	+		OKGIIK_15920	0.37	-1.3
3,479,421	+		OKGIIK_15920	0.54	-0.6
3,479,421	+		OKGIIK_15920	0.54	-0.3
3,479,421	+		OKGIIK_15920	0.54	-0.9
3,479,421	+		OKGIIK_15920	0.54	-0.1
3,479,421	+		OKGIIK_15920	0.54	-2.3
3,479,421	+		OKGIIK_15920	0.54	+1.3
3,479,421	+		OKGIIK_15920	0.54	+0.5
3,479,421	+		OKGIIK_15920	0.54	-1.3
3,479,421	+		OKGIIK_15920	0.54	-0.1
3,479,421	+		OKGIIK_15920	0.54	-0.1
3,479,422	-		OKGIIK_15920	0.54	+2.3
3,479,422	-		OKGIIK_15920	0.54	-0.3
3,479,422	-		OKGIIK_15920	0.54	+2.3
3,479,422	-		OKGIIK_15920	0.54	+1.1
3,479,422	-		OKGIIK_15920	0.54	-1.3
3,479,422	-		OKGIIK_15920	0.54	+1.0
3,479,422	-		OKGIIK_15920	0.54	-1.3
3,479,422	-		OKGIIK_15920	0.54	+1.5
3,479,422	-		OKGIIK_15920	0.54	-1.0
3,479,466	+		OKGIIK_15920	0.60	-0.7
3,479,466	+		OKGIIK_15920	0.60	+0.9
3,479,466	+		OKGIIK_15920	0.60	+2.1
3,479,466	+		OKGIIK_15920	0.60	-1.2
3,479,466	+		OKGIIK_15920	0.60	+1.5
3,479,466	+		OKGIIK_15920	0.60	-0.5
3,479,467	-		OKGIIK_15920	0.60	-2.4
3,479,467	-		OKGIIK_15920	0.60	+0.9
3,479,467	-		OKGIIK_15920	0.60	+0.9
3,479,467	-		OKGIIK_15920	0.60	+0.3
3,479,556	+		OKGIIK_15920	0.73	-0.4
3,479,556	+		OKGIIK_15920	0.73	-1.1
3,479,556	+		OKGIIK_15920	0.73	-0.3
3,479,556	+		OKGIIK_15920	0.73	-2.2
3,479,556	+		OKGIIK_15920	0.73	-1.9
3,479,557	-		OKGIIK_15920	0.73	+0.5
3,479,557	-		OKGIIK_15920	0.73	+0.4
3,479,557	-		OKGIIK_15920	0.73	-0.7
3,479,557	-		OKGIIK_15920	0.73	-1.2
3,479,557	-		OKGIIK_15920	0.73	+0.1
3,479,601	+		OKGIIK_15920	0.79	+1.3
3,479,601	+		OKGIIK_15920	0.79	-1.6
3,479,601	+		OKGIIK_15920	0.79	+0.5
3,479,601	+		OKGIIK_15920	0.79	-0.9
3,479,601	+		OKGIIK_15920	0.79	-1.5
3,479,601	+		OKGIIK_15920	0.79	-0.7
3,479,601	+		OKGIIK_15920	0.79	+0.2
3,479,602	-		OKGIIK_15920	0.80	+0.3
3,479,602	-		OKGIIK_15920	0.80	+0.3
3,479,602	-		OKGIIK_15920	0.80	+0.3
3,479,602	-		OKGIIK_15920	0.80	+1.5
3,479,602	-		OKGIIK_15920	0.80	-0.3
3,479,602	-		OKGIIK_15920	0.80	-0.7
3,479,602	-		OKGIIK_15920	0.80	+0.2
3,479,629	+		OKGIIK_15920	0.83	-1.9
3,479,629	+		OKGIIK_15920	0.83	-0.1
3,479,629	+		OKGIIK_15920	0.83	-0.9
3,479,629	+		OKGIIK_15920	0.83	-0.1
3,479,629	+		OKGIIK_15920	0.83	-0.9
3,479,629	+		OKGIIK_15920	0.83	+0.5
3,479,629	+		OKGIIK_15920	0.83	-1.4
3,479,629	+		OKGIIK_15920	0.83	+1.3
3,479,629	+		OKGIIK_15920	0.83	+1.7
3,479,629	+		OKGIIK_15920	0.83	-0.3
3,479,629	+		OKGIIK_15920	0.83	-1.4
3,479,629	+		OKGIIK_15920	0.83	-0.4
3,479,629	+		OKGIIK_15920	0.83	-0.3
3,479,629	+		OKGIIK_15920	0.83	-1.2
3,479,629	+		OKGIIK_15920	0.83	-0.1
3,479,629	+		OKGIIK_15920	0.83	-1.1
3,479,629	+		OKGIIK_15920	0.83	-1.7
3,479,630	-		OKGIIK_15920	0.84	-1.1
3,479,630	-		OKGIIK_15920	0.84	-0.1
3,479,630	-		OKGIIK_15920	0.84	-2.3
3,479,630	-		OKGIIK_15920	0.84	+1.0
3,479,630	-		OKGIIK_15920	0.84	-0.6
3,479,630	-		OKGIIK_15920	0.84	+0.3
3,479,630	-		OKGIIK_15920	0.84	-0.5
3,479,630	-		OKGIIK_15920	0.84	+0.7
3,479,630	-		OKGIIK_15920	0.84	-1.2
3,479,630	-		OKGIIK_15920	0.84	-0.2
3,479,630	-		OKGIIK_15920	0.84	+0.8
3,479,630	-		OKGIIK_15920	0.84	+0.3
3,479,630	-		OKGIIK_15920	0.84	+0.6
3,479,630	-		OKGIIK_15920	0.84	+1.8
3,479,630	-		OKGIIK_15920	0.84	-1.5
3,479,630	-		OKGIIK_15920	0.84	-1.7
3,479,630	-		OKGIIK_15920	0.84	-0.9
3,479,630	-		OKGIIK_15920	0.84	-0.2
3,479,688	+				-0.3
3,479,688	+				-1.9
3,479,688	+				+0.1
3,479,689	-				-1.8
3,479,689	-				-0.9
3,479,689	-				-0.9
3,479,756	+				+1.3
3,479,756	+				-0.4
3,479,756	+				-1.9
3,479,756	+				+0.5
3,479,756	+				-1.2
3,479,756	+				-0.7
3,479,756	+				+1.8
3,479,756	+				-0.9
3,479,757	-				+0.3
3,479,757	-				-0.1
3,479,757	-				-2.0
3,479,757	-				+0.3
3,479,757	-				+0.3
3,479,757	-				-0.3
3,479,803	+				-0.4
3,479,804	-				+0.3
3,479,830	-				+1.0
3,479,957	+				-0.1
3,480,039	+				-0.5
3,480,039	+				-0.1
3,480,039	+				+0.3
3,480,039	+				+0.7
3,480,039	+				-1.6
3,480,039	+				-0.3
3,480,039	+				+0.1
3,480,039	+				+0.3
3,480,040	-				-1.2
3,480,040	-				-1.9
3,480,040	-				+0.6
3,480,040	-				-1.1
3,480,230	+	queD	OKGIIK_15925	0.57	-0.1
3,480,230	+	queD	OKGIIK_15925	0.57	+1.5
3,480,230	+	queD	OKGIIK_15925	0.57	+0.3
3,480,230	+	queD	OKGIIK_15925	0.57	+1.0
3,480,230	+	queD	OKGIIK_15925	0.57	+1.3
3,480,231	-	queD	OKGIIK_15925	0.57	+0.1
3,480,231	-	queD	OKGIIK_15925	0.57	+0.7
3,480,367	+				-2.0
3,480,368	-				-0.9
3,480,414	+				+0.1
3,480,415	-				-1.1
3,480,436	+				-0.4
3,480,436	+				-0.3
3,480,437	-				-1.4
3,480,469	+				+0.8
3,480,469	+				+0.9
3,480,469	+				-1.3
3,480,469	+				+0.7
3,480,470	-				-0.2
3,480,470	-				-0.4
3,480,470	-				-0.2
3,480,470	-				-0.5
3,480,496	+				-0.9
3,480,496	+				-0.7
3,480,496	+				-1.8
3,480,496	+				+0.3
3,480,496	+				+0.8
3,480,496	+				-0.5
3,480,497	-				+0.8
3,480,512	-				-0.1
3,480,532	+				-0.6
3,480,532	+				-1.5
3,480,532	+				+0.9
3,480,532	+				+1.5
3,480,532	+				-1.1
3,480,532	+				-0.1
3,480,532	+				+0.9
3,480,533	-				-0.8
3,480,533	-				-0.2
3,480,533	-				-2.0
3,480,533	-				-0.9
3,480,533	-				+0.8
3,480,533	-				+0.2
3,480,533	-				+0.1
3,480,533	-				-0.3
3,480,571	+				-0.4
3,480,571	+				+0.1
3,480,571	+				-0.1
3,480,571	+				+0.1
3,480,571	+				-0.7
3,480,572	-				-0.2
3,480,572	-				+0.1
3,480,925	+				+0.9
3,480,925	+				-0.1
3,480,925	+				+0.8
3,480,925	+				+1.5
3,480,925	+				-0.5
3,480,925	+				-0.2
3,480,925	+				-0.5
3,480,925	+				-0.9
3,480,925	+				-0.4
3,480,926	-				+0.8
3,480,926	-				-0.5
3,481,110	+				-0.3
3,481,110	+				-0.1
3,481,110	+				-0.1
3,481,112	+				-1.3
3,481,118	+		OKGIIK_15935	0.11	-0.3
3,481,145	+		OKGIIK_15935	0.16	-1.7
3,481,181	+		OKGIIK_15935	0.24	+0.3
3,481,181	+		OKGIIK_15935	0.24	+0.3
3,481,181	+		OKGIIK_15935	0.24	-0.1
3,481,181	+		OKGIIK_15935	0.24	-0.7
3,481,181	+		OKGIIK_15935	0.24	+0.1
3,481,181	+		OKGIIK_15935	0.24	-0.6
3,481,181	+		OKGIIK_15935	0.24	-0.9
3,481,181	+		OKGIIK_15935	0.24	+0.3
3,481,181	+		OKGIIK_15935	0.24	+1.6
3,481,181	+		OKGIIK_15935	0.24	-2.5
3,481,181	+		OKGIIK_15935	0.24	-0.1
3,481,181	+		OKGIIK_15935	0.24	-0.1
3,481,181	+		OKGIIK_15935	0.24	+0.2
3,481,181	+		OKGIIK_15935	0.24	+0.7
3,481,181	+		OKGIIK_15935	0.24	+0.9
3,481,197	+		OKGIIK_15935	0.27	-0.1
3,481,197	+		OKGIIK_15935	0.27	-0.5
3,481,197	+		OKGIIK_15935	0.27	-0.4
3,481,197	+		OKGIIK_15935	0.27	-0.1