Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_14640

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
3,192,157	+	lpd	OKGIIK_14635	0.33	-0.9
3,192,157	+	lpd	OKGIIK_14635	0.33	-0.7
3,192,157	+	lpd	OKGIIK_14635	0.33	-0.6
3,192,158	-	lpd	OKGIIK_14635	0.34	-0.6
3,192,158	-	lpd	OKGIIK_14635	0.34	+0.3
3,192,158	-	lpd	OKGIIK_14635	0.34	-0.3
3,192,158	-	lpd	OKGIIK_14635	0.34	+0.4
3,192,158	-	lpd	OKGIIK_14635	0.34	+0.0
3,192,158	-	lpd	OKGIIK_14635	0.34	-0.1
3,192,159	+	lpd	OKGIIK_14635	0.34	-1.9
3,192,159	+	lpd	OKGIIK_14635	0.34	-0.6
3,192,159	+	lpd	OKGIIK_14635	0.34	+0.0
3,192,159	+	lpd	OKGIIK_14635	0.34	+0.4
3,192,159	+	lpd	OKGIIK_14635	0.34	-2.1
3,192,159	+	lpd	OKGIIK_14635	0.34	+0.9
3,192,160	-	lpd	OKGIIK_14635	0.34	-0.6
3,192,160	-	lpd	OKGIIK_14635	0.34	+0.6
3,192,160	-	lpd	OKGIIK_14635	0.34	+0.0
3,192,160	-	lpd	OKGIIK_14635	0.34	+0.8
3,192,160	-	lpd	OKGIIK_14635	0.34	-0.7
3,192,160	-	lpd	OKGIIK_14635	0.34	-1.4
3,192,160	-	lpd	OKGIIK_14635	0.34	+0.3
3,192,160	-	lpd	OKGIIK_14635	0.34	-0.6
3,192,160	-	lpd	OKGIIK_14635	0.34	+1.4
3,192,160	-	lpd	OKGIIK_14635	0.34	-0.2
3,192,160	-	lpd	OKGIIK_14635	0.34	-0.1
3,192,160	-	lpd	OKGIIK_14635	0.34	-1.7
3,192,300	+	lpd	OKGIIK_14635	0.44	-0.1
3,192,300	+	lpd	OKGIIK_14635	0.44	-0.9
3,192,301	-	lpd	OKGIIK_14635	0.44	+1.4
3,192,301	-	lpd	OKGIIK_14635	0.44	-1.7
3,192,384	+	lpd	OKGIIK_14635	0.50	-0.8
3,192,384	+	lpd	OKGIIK_14635	0.50	-0.7
3,192,384	+	lpd	OKGIIK_14635	0.50	+0.2
3,192,384	+	lpd	OKGIIK_14635	0.50	+0.7
3,192,384	+	lpd	OKGIIK_14635	0.50	-1.5
3,192,385	-	lpd	OKGIIK_14635	0.50	+1.3
3,192,385	-	lpd	OKGIIK_14635	0.50	+0.3
3,192,385	-	lpd	OKGIIK_14635	0.50	-1.7
3,192,385	-	lpd	OKGIIK_14635	0.50	-0.7
3,192,385	-	lpd	OKGIIK_14635	0.50	+1.4
3,192,385	-	lpd	OKGIIK_14635	0.50	-1.3
3,192,385	-	lpd	OKGIIK_14635	0.50	-0.6
3,192,529	+	lpd	OKGIIK_14635	0.61	-0.3
3,192,530	-	lpd	OKGIIK_14635	0.61	+0.2
3,192,627	-	lpd	OKGIIK_14635	0.68	-0.7
3,192,727	+	lpd	OKGIIK_14635	0.76	-0.4
3,192,728	-	lpd	OKGIIK_14635	0.76	+0.1
3,192,728	-	lpd	OKGIIK_14635	0.76	+0.9
3,192,751	+	lpd	OKGIIK_14635	0.77	+0.9
3,192,752	-	lpd	OKGIIK_14635	0.77	-0.3
3,192,849	+	lpd	OKGIIK_14635	0.85	+1.6
3,192,849	+	lpd	OKGIIK_14635	0.85	+0.2
3,192,850	-	lpd	OKGIIK_14635	0.85	+0.9
3,192,850	-	lpd	OKGIIK_14635	0.85	-0.6
3,192,850	-	lpd	OKGIIK_14635	0.85	-0.9
3,192,850	-	lpd	OKGIIK_14635	0.85	-0.6
3,192,860	+	lpd	OKGIIK_14635	0.85	-0.3
3,192,860	+	lpd	OKGIIK_14635	0.85	-0.1
3,192,861	-	lpd	OKGIIK_14635	0.85	+0.8
3,192,861	-	lpd	OKGIIK_14635	0.85	-0.9
3,192,866	+	lpd	OKGIIK_14635	0.86	+0.1
3,192,866	+	lpd	OKGIIK_14635	0.86	+0.9
3,192,935	+				-1.9
3,192,935	+				-1.4
3,192,935	+				-0.3
3,193,043	-				-0.7
3,193,043	-				-0.7
3,193,043	-				-0.6
3,193,145	+		OKGIIK_14640	0.12	+0.4
3,193,146	-		OKGIIK_14640	0.13	-1.1
3,193,200	+		OKGIIK_14640	0.28	-0.5
3,193,200	+		OKGIIK_14640	0.28	+1.4
3,193,200	+		OKGIIK_14640	0.28	-1.2
3,193,200	+		OKGIIK_14640	0.28	+1.2
3,193,200	+		OKGIIK_14640	0.28	-0.7
3,193,200	+		OKGIIK_14640	0.28	+2.1
3,193,200	+		OKGIIK_14640	0.28	+3.1
3,193,200	+		OKGIIK_14640	0.28	-0.3
3,193,200	+		OKGIIK_14640	0.28	+0.4
3,193,200	+		OKGIIK_14640	0.28	-0.3
3,193,200	+		OKGIIK_14640	0.28	+0.8
3,193,200	+		OKGIIK_14640	0.28	-0.2
3,193,200	+		OKGIIK_14640	0.28	-2.7
3,193,200	+		OKGIIK_14640	0.28	-0.1
3,193,200	+		OKGIIK_14640	0.28	+1.3
3,193,201	-		OKGIIK_14640	0.28	-0.2
3,193,201	-		OKGIIK_14640	0.28	+0.3
3,193,201	-		OKGIIK_14640	0.28	-1.7
3,193,201	-		OKGIIK_14640	0.28	-1.1
3,193,201	-		OKGIIK_14640	0.28	+9.0
3,193,220	+		OKGIIK_14640	0.33	-2.3
3,193,233	-		OKGIIK_14640	0.37	+0.3
3,193,233	-		OKGIIK_14640	0.37	+1.1
3,193,284	-		OKGIIK_14640	0.51	-1.7
3,193,284	-		OKGIIK_14640	0.51	-0.2
3,193,559	-				-0.1
3,193,927	+	merA	OKGIIK_14645	0.27	-0.7
3,193,927	+	merA	OKGIIK_14645	0.27	+0.5
3,193,927	+	merA	OKGIIK_14645	0.27	+0.3
3,193,927	+	merA	OKGIIK_14645	0.27	+0.3
3,193,928	-	merA	OKGIIK_14645	0.27	-0.7
3,193,928	-	merA	OKGIIK_14645	0.27	-0.1
3,193,928	-	merA	OKGIIK_14645	0.27	-0.7
3,193,928	-	merA	OKGIIK_14645	0.27	+0.6
3,193,928	-	merA	OKGIIK_14645	0.27	-0.7
3,193,928	-	merA	OKGIIK_14645	0.27	-0.7
3,193,949	+	merA	OKGIIK_14645	0.28	+0.4
3,193,949	+	merA	OKGIIK_14645	0.28	-0.7
3,193,950	-	merA	OKGIIK_14645	0.28	+0.7
3,193,950	-	merA	OKGIIK_14645	0.28	-0.3
3,193,950	-	merA	OKGIIK_14645	0.28	-0.3
3,193,966	+	merA	OKGIIK_14645	0.29	+0.7
3,193,966	+	merA	OKGIIK_14645	0.29	-0.3
3,193,966	+	merA	OKGIIK_14645	0.29	-0.6
3,193,966	+	merA	OKGIIK_14645	0.29	-1.1
3,193,966	+	merA	OKGIIK_14645	0.29	+1.8
3,193,966	+	merA	OKGIIK_14645	0.29	+0.7
3,193,967	-	merA	OKGIIK_14645	0.29	-2.4
3,193,967	-	merA	OKGIIK_14645	0.29	-1.9
3,193,967	-	merA	OKGIIK_14645	0.29	-0.8
3,194,296	+	merA	OKGIIK_14645	0.49	+0.4
3,194,296	+	merA	OKGIIK_14645	0.49	-1.5
3,194,296	+	merA	OKGIIK_14645	0.49	-0.7
3,194,296	+	merA	OKGIIK_14645	0.49	-0.7
3,194,297	-	merA	OKGIIK_14645	0.49	-0.2
3,194,297	-	merA	OKGIIK_14645	0.49	-0.3
3,194,297	-	merA	OKGIIK_14645	0.49	+1.4
3,194,337	+	merA	OKGIIK_14645	0.51	+0.4
3,194,338	-	merA	OKGIIK_14645	0.51	-0.1
3,194,393	-	merA	OKGIIK_14645	0.55	+1.5
3,194,393	-	merA	OKGIIK_14645	0.55	-1.2