Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13980

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
3,034,824	+	cfa	OKGIIK_13970	0.81	+2.3
3,034,824	+	cfa	OKGIIK_13970	0.81	+0.5
3,034,825	-	cfa	OKGIIK_13970	0.81	+0.1
3,034,888	+	cfa	OKGIIK_13970	0.87	+0.1
3,034,889	-	cfa	OKGIIK_13970	0.87	+1.1
3,034,889	-	cfa	OKGIIK_13970	0.87	+0.3
3,034,903	-	cfa	OKGIIK_13970	0.88	+0.2
3,035,011	-				+0.3
3,035,192	+	blc	OKGIIK_13975	0.23	-1.4
3,035,192	+	blc	OKGIIK_13975	0.23	-0.1
3,035,192	+	blc	OKGIIK_13975	0.23	-1.5
3,035,193	-	blc	OKGIIK_13975	0.24	-1.1
3,035,235	-	blc	OKGIIK_13975	0.31	-0.7
3,035,252	+	blc	OKGIIK_13975	0.35	-2.1
3,035,252	+	blc	OKGIIK_13975	0.35	+0.3
3,035,253	-	blc	OKGIIK_13975	0.35	+1.9
3,035,411	+	blc	OKGIIK_13975	0.64	-0.8
3,035,411	+	blc	OKGIIK_13975	0.64	+0.4
3,035,411	+	blc	OKGIIK_13975	0.64	-0.1
3,035,412	-	blc	OKGIIK_13975	0.64	-0.9
3,035,412	-	blc	OKGIIK_13975	0.64	+0.1
3,035,412	-	blc	OKGIIK_13975	0.64	+0.0
3,035,412	-	blc	OKGIIK_13975	0.64	+1.2
3,035,412	-	blc	OKGIIK_13975	0.64	+0.1
3,035,412	-	blc	OKGIIK_13975	0.64	-1.1
3,035,424	-	blc	OKGIIK_13975	0.67	+1.2
3,035,424	-	blc	OKGIIK_13975	0.67	-0.9
3,035,438	+	blc	OKGIIK_13975	0.69	+1.1
3,035,438	+	blc	OKGIIK_13975	0.69	-0.7
3,035,439	-	blc	OKGIIK_13975	0.69	-0.2
3,035,439	-	blc	OKGIIK_13975	0.69	+1.5
3,035,439	-	blc	OKGIIK_13975	0.69	+2.5
3,035,439	-	blc	OKGIIK_13975	0.69	-0.3
3,035,474	+	blc	OKGIIK_13975	0.76	+0.0
3,035,474	+	blc	OKGIIK_13975	0.76	-1.3
3,035,475	-	blc	OKGIIK_13975	0.76	-1.3
3,035,475	-	blc	OKGIIK_13975	0.76	-0.1
3,035,520	-	blc	OKGIIK_13975	0.85	+0.3
3,035,520	-	blc	OKGIIK_13975	0.85	+0.3
3,035,721	+				-0.5
3,035,721	+				-0.3
3,035,721	+				+1.4
3,035,722	-				-1.1
3,035,723	+				+0.3
3,035,723	+				-0.0
3,035,723	+				+0.3
3,035,723	+				-1.9
3,035,723	+				-1.4
3,035,723	+				+0.5
3,035,723	+				-0.3
3,035,723	+				+0.3
3,035,723	+				-1.1
3,035,723	+				+0.1
3,035,724	-	Ile2_trna	OKGIIK_13980	0.11	-0.1
3,035,724	-	Ile2_trna	OKGIIK_13980	0.11	+0.4
3,035,736	-	Ile2_trna	OKGIIK_13980	0.26	+0.1
3,035,752	-	Ile2_trna	OKGIIK_13980	0.47	+0.8
3,035,858	+				+1.3
3,035,858	+				-1.1
3,035,859	-				+0.3
3,035,863	+				+1.8
3,035,864	-				-0.1
3,035,864	-				-1.6
3,035,864	-				-0.2
3,035,876	+				+1.0
3,035,877	-				+0.0
3,035,964	+				+0.4
3,035,964	+				-0.2
3,035,964	+				+0.2
3,035,964	+				+0.5
3,035,983	+				-0.5
3,035,983	+				-1.1
3,035,983	+				-0.1
3,035,983	+				-0.5
3,035,984	-				-0.9
3,036,027	+				-1.3
3,036,027	+				+0.3
3,036,028	-				-0.3
3,036,147	+				+0.2
3,036,148	-				+1.3
3,036,211	+				-1.8
3,036,211	+				-0.0
3,036,211	+				-0.4
3,036,211	+				+0.5
3,036,211	+				-0.2
3,036,211	+				-1.4
3,036,211	+				+0.9
3,036,211	+				+0.6
3,036,211	+				+0.7
3,036,211	+				+0.1
3,036,212	-				-0.1
3,036,212	-				-1.5
3,036,212	-				-1.1
3,036,212	-				+1.9
3,036,212	-				-0.7
3,036,212	-				-0.9
3,036,212	-				-0.5
3,036,212	-				+0.9
3,036,220	+				-0.3
3,036,220	+				-0.3
3,036,220	+				-0.0
3,036,221	-				+0.3
3,036,221	-				-0.6
3,036,221	-				-0.1
3,036,221	-				+1.9
3,036,223	+				+0.5
3,036,223	+				+0.2
3,036,223	+				-0.3
3,036,224	-				+0.1
3,036,224	-				+1.1
3,036,224	-				+0.3
3,036,224	-				-0.5
3,036,305	-		OKGIIK_13985	0.11	+0.8
3,036,305	-		OKGIIK_13985	0.11	-0.1
3,036,305	-		OKGIIK_13985	0.11	+0.1
3,036,328	+		OKGIIK_13985	0.12	-1.7
3,036,487	-		OKGIIK_13985	0.18	+1.5
3,036,487	-		OKGIIK_13985	0.18	-0.2
3,036,502	+		OKGIIK_13985	0.19	+1.9
3,036,502	+		OKGIIK_13985	0.19	-0.1
3,036,502	+		OKGIIK_13985	0.19	+0.9
3,036,502	+		OKGIIK_13985	0.19	-0.4
3,036,503	-		OKGIIK_13985	0.19	+0.9
3,036,503	-		OKGIIK_13985	0.19	-0.3
3,036,503	-		OKGIIK_13985	0.19	+0.9
3,036,503	-		OKGIIK_13985	0.19	-1.1
3,036,503	-		OKGIIK_13985	0.19	-1.8
3,036,503	-		OKGIIK_13985	0.19	+1.3
3,036,503	-		OKGIIK_13985	0.19	-0.3
3,036,505	+		OKGIIK_13985	0.19	-0.3
3,036,505	+		OKGIIK_13985	0.19	+0.5
3,036,505	+		OKGIIK_13985	0.19	-0.6
3,036,505	+		OKGIIK_13985	0.19	-1.3
3,036,505	+		OKGIIK_13985	0.19	+0.1
3,036,505	+		OKGIIK_13985	0.19	+1.3
3,036,505	+		OKGIIK_13985	0.19	-1.1
3,036,505	+		OKGIIK_13985	0.19	+1.3
3,036,506	-		OKGIIK_13985	0.19	-2.0
3,036,506	-		OKGIIK_13985	0.19	+1.3
3,036,506	-		OKGIIK_13985	0.19	-0.1
3,036,535	+		OKGIIK_13985	0.20	+1.3
3,036,535	+		OKGIIK_13985	0.20	+0.5
3,036,536	-		OKGIIK_13985	0.20	-0.4
3,036,536	-		OKGIIK_13985	0.20	-1.8
3,036,538	+		OKGIIK_13985	0.21	-0.7
3,036,539	-		OKGIIK_13985	0.21	-0.2
3,036,539	-		OKGIIK_13985	0.21	-0.5
3,036,631	+		OKGIIK_13985	0.24	+0.5
3,036,631	+		OKGIIK_13985	0.24	-1.1
3,036,632	-		OKGIIK_13985	0.24	-0.7
3,036,632	-		OKGIIK_13985	0.24	+0.4
3,036,632	-		OKGIIK_13985	0.24	+0.5
3,036,632	-		OKGIIK_13985	0.24	+0.1
3,036,632	-		OKGIIK_13985	0.24	+0.3
3,036,632	-		OKGIIK_13985	0.24	+0.3
3,036,634	-		OKGIIK_13985	0.24	-0.9