Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13905

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_13895 and OKGIIK_13900 are separated by 144 nucleotidesOKGIIK_13900 and OKGIIK_13905 are separated by 20 nucleotidesOKGIIK_13905 and OKGIIK_13910 are separated by 150 nucleotides OKGIIK_13895: OKGIIK_13895 - DUF2182 domain-containing protein, at 3,020,142 to 3,020,855 _13895 OKGIIK_13900: OKGIIK_13900 - Thioredoxin, at 3,021,000 to 3,021,788 _13900 OKGIIK_13905: OKGIIK_13905 - Glutathione S-transferase, at 3,021,809 to 3,022,462 _13905 OKGIIK_13910: OKGIIK_13910 - DNA-binding protein, at 3,022,613 to 3,023,833 _13910 Position (kb) 3021 3022 3023Strain fitness (log2 ratio) -2 -1 0 1 2at 3020.936 kb on + strandat 3020.936 kb on + strandat 3020.937 kb on - strandat 3020.937 kb on - strandat 3020.937 kb on - strandat 3021.043 kb on + strandat 3021.043 kb on + strandat 3021.043 kb on + strandat 3021.115 kb on + strand, within OKGIIK_13900at 3021.116 kb on - strand, within OKGIIK_13900at 3021.116 kb on - strand, within OKGIIK_13900at 3021.148 kb on + strand, within OKGIIK_13900at 3021.149 kb on - strand, within OKGIIK_13900at 3021.149 kb on - strand, within OKGIIK_13900at 3021.149 kb on - strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.157 kb on + strand, within OKGIIK_13900at 3021.158 kb on - strand, within OKGIIK_13900at 3021.158 kb on - strand, within OKGIIK_13900at 3021.158 kb on - strand, within OKGIIK_13900at 3021.158 kb on - strand, within OKGIIK_13900at 3021.158 kb on - strand, within OKGIIK_13900at 3021.158 kb on - strand, within OKGIIK_13900at 3021.158 kb on - strand, within OKGIIK_13900at 3021.158 kb on - strand, within OKGIIK_13900at 3021.158 kb on - strand, within OKGIIK_13900at 3021.166 kb on + strand, within OKGIIK_13900at 3021.166 kb on + strand, within OKGIIK_13900at 3021.166 kb on + strand, within OKGIIK_13900at 3021.167 kb on - strand, within OKGIIK_13900at 3021.310 kb on + strand, within OKGIIK_13900at 3021.310 kb on + strand, within OKGIIK_13900at 3021.310 kb on + strand, within OKGIIK_13900at 3021.310 kb on + strand, within OKGIIK_13900at 3021.310 kb on + strand, within OKGIIK_13900at 3021.310 kb on + strand, within OKGIIK_13900at 3021.310 kb on + strand, within OKGIIK_13900at 3021.311 kb on - strand, within OKGIIK_13900at 3021.311 kb on - strand, within OKGIIK_13900at 3021.311 kb on - strand, within OKGIIK_13900at 3021.311 kb on - strand, within OKGIIK_13900at 3021.313 kb on - strand, within OKGIIK_13900at 3021.316 kb on + strand, within OKGIIK_13900at 3021.317 kb on - strand, within OKGIIK_13900at 3021.317 kb on - strand, within OKGIIK_13900at 3021.317 kb on - strand, within OKGIIK_13900at 3021.317 kb on - strand, within OKGIIK_13900at 3021.317 kb on - strand, within OKGIIK_13900at 3021.421 kb on + strand, within OKGIIK_13900at 3021.421 kb on + strand, within OKGIIK_13900at 3021.421 kb on + strand, within OKGIIK_13900at 3021.421 kb on + strand, within OKGIIK_13900at 3021.421 kb on + strand, within OKGIIK_13900at 3021.421 kb on + strand, within OKGIIK_13900at 3021.421 kb on + strand, within OKGIIK_13900at 3021.421 kb on + strand, within OKGIIK_13900at 3021.421 kb on + strand, within OKGIIK_13900at 3021.422 kb on - strand, within OKGIIK_13900at 3021.422 kb on - strand, within OKGIIK_13900at 3021.422 kb on - strand, within OKGIIK_13900at 3021.422 kb on - strand, within OKGIIK_13900at 3021.422 kb on - strand, within OKGIIK_13900at 3021.422 kb on - strand, within OKGIIK_13900at 3021.547 kb on + strand, within OKGIIK_13900at 3021.547 kb on + strand, within OKGIIK_13900at 3021.547 kb on + strand, within OKGIIK_13900at 3021.547 kb on + strand, within OKGIIK_13900at 3021.547 kb on + strand, within OKGIIK_13900at 3021.548 kb on - strand, within OKGIIK_13900at 3021.548 kb on - strand, within OKGIIK_13900at 3021.548 kb on - strand, within OKGIIK_13900at 3021.571 kb on + strand, within OKGIIK_13900at 3021.572 kb on - strand, within OKGIIK_13900at 3021.644 kb on - strand, within OKGIIK_13900at 3021.901 kb on - strand, within OKGIIK_13905at 3021.901 kb on - strand, within OKGIIK_13905at 3021.901 kb on - strand, within OKGIIK_13905at 3022.002 kb on + strand, within OKGIIK_13905at 3022.002 kb on + strand, within OKGIIK_13905at 3022.002 kb on + strand, within OKGIIK_13905at 3022.003 kb on - strand, within OKGIIK_13905at 3022.003 kb on - strand, within OKGIIK_13905at 3022.147 kb on + strand, within OKGIIK_13905at 3022.147 kb on + strand, within OKGIIK_13905at 3022.148 kb on - strand, within OKGIIK_13905at 3022.357 kb on - strand, within OKGIIK_13905at 3022.533 kb on - strandat 3022.533 kb on - strandat 3022.748 kb on + strand, within OKGIIK_13910at 3022.749 kb on - strand, within OKGIIK_13910at 3022.749 kb on - strand, within OKGIIK_13910

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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3,020,936 + -0.5
3,020,936 + -0.7
3,020,937 - +0.7
3,020,937 - -0.4
3,020,937 - +0.5
3,021,043 + +0.3
3,021,043 + +2.3
3,021,043 + -1.1
3,021,115 + OKGIIK_13900 0.15 -1.3
3,021,116 - OKGIIK_13900 0.15 -0.1
3,021,116 - OKGIIK_13900 0.15 -0.5
3,021,148 + OKGIIK_13900 0.19 +1.3
3,021,149 - OKGIIK_13900 0.19 -1.5
3,021,149 - OKGIIK_13900 0.19 +0.3
3,021,149 - OKGIIK_13900 0.19 +1.3
3,021,157 + OKGIIK_13900 0.20 +1.1
3,021,157 + OKGIIK_13900 0.20 +1.0
3,021,157 + OKGIIK_13900 0.20 +0.8
3,021,157 + OKGIIK_13900 0.20 -0.5
3,021,157 + OKGIIK_13900 0.20 +0.1
3,021,157 + OKGIIK_13900 0.20 +0.7
3,021,157 + OKGIIK_13900 0.20 -0.1
3,021,157 + OKGIIK_13900 0.20 -0.3
3,021,157 + OKGIIK_13900 0.20 +0.9
3,021,157 + OKGIIK_13900 0.20 +0.9
3,021,157 + OKGIIK_13900 0.20 -1.2
3,021,157 + OKGIIK_13900 0.20 +0.4
3,021,157 + OKGIIK_13900 0.20 +0.6
3,021,157 + OKGIIK_13900 0.20 -0.8
3,021,157 + OKGIIK_13900 0.20 -1.6
3,021,157 + OKGIIK_13900 0.20 +1.1
3,021,157 + OKGIIK_13900 0.20 +0.3
3,021,158 - OKGIIK_13900 0.20 +0.3
3,021,158 - OKGIIK_13900 0.20 -0.1
3,021,158 - OKGIIK_13900 0.20 -0.3
3,021,158 - OKGIIK_13900 0.20 -1.8
3,021,158 - OKGIIK_13900 0.20 +2.0
3,021,158 - OKGIIK_13900 0.20 +0.3
3,021,158 - OKGIIK_13900 0.20 +0.5
3,021,158 - OKGIIK_13900 0.20 -1.1
3,021,158 - OKGIIK_13900 0.20 +0.3
3,021,166 + OKGIIK_13900 0.21 -1.1
3,021,166 + OKGIIK_13900 0.21 +0.2
3,021,166 + OKGIIK_13900 0.21 +0.5
3,021,167 - OKGIIK_13900 0.21 +0.3
3,021,310 + OKGIIK_13900 0.39 +0.7
3,021,310 + OKGIIK_13900 0.39 -0.5
3,021,310 + OKGIIK_13900 0.39 -0.5
3,021,310 + OKGIIK_13900 0.39 +0.3
3,021,310 + OKGIIK_13900 0.39 +0.5
3,021,310 + OKGIIK_13900 0.39 -0.2
3,021,310 + OKGIIK_13900 0.39 -1.3
3,021,311 - OKGIIK_13900 0.39 -0.3
3,021,311 - OKGIIK_13900 0.39 +1.0
3,021,311 - OKGIIK_13900 0.39 +0.4
3,021,311 - OKGIIK_13900 0.39 +1.9
3,021,313 - OKGIIK_13900 0.40 +0.9
3,021,316 + OKGIIK_13900 0.40 +0.7
3,021,317 - OKGIIK_13900 0.40 +0.2
3,021,317 - OKGIIK_13900 0.40 +1.0
3,021,317 - OKGIIK_13900 0.40 +0.9
3,021,317 - OKGIIK_13900 0.40 +0.3
3,021,317 - OKGIIK_13900 0.40 -0.7
3,021,421 + OKGIIK_13900 0.53 +0.4
3,021,421 + OKGIIK_13900 0.53 +0.7
3,021,421 + OKGIIK_13900 0.53 +0.3
3,021,421 + OKGIIK_13900 0.53 -0.1
3,021,421 + OKGIIK_13900 0.53 +0.3
3,021,421 + OKGIIK_13900 0.53 -2.3
3,021,421 + OKGIIK_13900 0.53 -0.5
3,021,421 + OKGIIK_13900 0.53 +1.5
3,021,421 + OKGIIK_13900 0.53 -0.1
3,021,422 - OKGIIK_13900 0.53 +0.7
3,021,422 - OKGIIK_13900 0.53 +0.6
3,021,422 - OKGIIK_13900 0.53 -0.5
3,021,422 - OKGIIK_13900 0.53 +1.5
3,021,422 - OKGIIK_13900 0.53 -0.1
3,021,422 - OKGIIK_13900 0.53 +1.0
3,021,547 + OKGIIK_13900 0.69 +0.9
3,021,547 + OKGIIK_13900 0.69 -0.2
3,021,547 + OKGIIK_13900 0.69 +0.1
3,021,547 + OKGIIK_13900 0.69 -0.1
3,021,547 + OKGIIK_13900 0.69 -2.2
3,021,548 - OKGIIK_13900 0.69 -1.5
3,021,548 - OKGIIK_13900 0.69 +0.9
3,021,548 - OKGIIK_13900 0.69 -0.2
3,021,571 + OKGIIK_13900 0.72 -1.2
3,021,572 - OKGIIK_13900 0.72 -2.4
3,021,644 - OKGIIK_13900 0.82 -0.1
3,021,901 - OKGIIK_13905 0.14 +0.7
3,021,901 - OKGIIK_13905 0.14 -0.1
3,021,901 - OKGIIK_13905 0.14 +0.5
3,022,002 + OKGIIK_13905 0.30 +0.6
3,022,002 + OKGIIK_13905 0.30 +1.0
3,022,002 + OKGIIK_13905 0.30 +0.1
3,022,003 - OKGIIK_13905 0.30 +0.3
3,022,003 - OKGIIK_13905 0.30 +1.3
3,022,147 + OKGIIK_13905 0.52 +0.3
3,022,147 + OKGIIK_13905 0.52 -0.3
3,022,148 - OKGIIK_13905 0.52 -0.4
3,022,357 - OKGIIK_13905 0.84 +1.0
3,022,533 - +2.3
3,022,533 - +1.3
3,022,748 + OKGIIK_13910 0.11 +0.2
3,022,749 - OKGIIK_13910 0.11 -0.1
3,022,749 - OKGIIK_13910 0.11 +1.5

Or see this region's nucleotide sequence