Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_12200

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
2,626,254	+	cydB	OKGIIK_12190	0.57	+0.5
2,626,254	+	cydB	OKGIIK_12190	0.57	-0.3
2,626,254	+	cydB	OKGIIK_12190	0.57	-0.0
2,626,254	+	cydB	OKGIIK_12190	0.57	+1.9
2,626,254	+	cydB	OKGIIK_12190	0.57	+1.6
2,626,254	+	cydB	OKGIIK_12190	0.57	-1.1
2,626,254	+	cydB	OKGIIK_12190	0.57	+1.1
2,626,254	+	cydB	OKGIIK_12190	0.57	+0.7
2,626,254	+	cydB	OKGIIK_12190	0.57	-1.2
2,626,254	+	cydB	OKGIIK_12190	0.57	+0.3
2,626,254	+	cydB	OKGIIK_12190	0.57	-1.4
2,626,254	+	cydB	OKGIIK_12190	0.57	+0.8
2,626,254	+	cydB	OKGIIK_12190	0.57	+1.3
2,626,254	+	cydB	OKGIIK_12190	0.57	+1.3
2,626,254	+	cydB	OKGIIK_12190	0.57	+0.4
2,626,254	+	cydB	OKGIIK_12190	0.57	+0.3
2,626,254	+	cydB	OKGIIK_12190	0.57	-0.5
2,626,254	+	cydB	OKGIIK_12190	0.57	+2.6
2,626,255	-	cydB	OKGIIK_12190	0.57	-1.0
2,626,255	-	cydB	OKGIIK_12190	0.57	+0.7
2,626,255	-	cydB	OKGIIK_12190	0.57	-0.7
2,626,255	-	cydB	OKGIIK_12190	0.57	-3.1
2,626,344	+	cydB	OKGIIK_12190	0.65	-0.4
2,626,344	+	cydB	OKGIIK_12190	0.65	-0.4
2,626,344	+	cydB	OKGIIK_12190	0.65	+0.7
2,626,344	+	cydB	OKGIIK_12190	0.65	-0.0
2,626,344	+	cydB	OKGIIK_12190	0.65	-0.0
2,626,344	+	cydB	OKGIIK_12190	0.65	-0.0
2,626,344	+	cydB	OKGIIK_12190	0.65	-0.0
2,626,345	-	cydB	OKGIIK_12190	0.65	-0.4
2,626,345	-	cydB	OKGIIK_12190	0.65	+1.2
2,626,345	-	cydB	OKGIIK_12190	0.65	+0.1
2,626,345	-	cydB	OKGIIK_12190	0.65	+1.3
2,626,345	-	cydB	OKGIIK_12190	0.65	-0.5
2,626,345	-	cydB	OKGIIK_12190	0.65	-0.6
2,626,345	-	cydB	OKGIIK_12190	0.65	+0.4
2,626,345	-	cydB	OKGIIK_12190	0.65	+0.8
2,626,345	-	cydB	OKGIIK_12190	0.65	+3.1
2,626,383	+	cydB	OKGIIK_12190	0.68	-0.6
2,626,383	+	cydB	OKGIIK_12190	0.68	-0.9
2,626,383	+	cydB	OKGIIK_12190	0.68	-0.4
2,626,384	-	cydB	OKGIIK_12190	0.68	-0.7
2,626,384	-	cydB	OKGIIK_12190	0.68	+0.8
2,626,384	-	cydB	OKGIIK_12190	0.68	-0.0
2,626,384	-	cydB	OKGIIK_12190	0.68	-1.3
2,626,384	-	cydB	OKGIIK_12190	0.68	-1.2
2,626,384	-	cydB	OKGIIK_12190	0.68	-0.3
2,626,384	-	cydB	OKGIIK_12190	0.68	+1.0
2,626,392	+	cydB	OKGIIK_12190	0.69	-1.0
2,626,666	-				+0.2
2,626,666	-				+0.1
2,626,666	-				-0.0
2,626,666	-				+2.3
2,626,680	+				-0.0
2,626,681	-				+0.3
2,626,738	-				-0.9
2,626,738	-				-1.5
2,626,749	+				+0.3
2,626,749	+				+1.9
2,626,749	+				+0.3
2,626,749	+				+1.2
2,626,749	+				+2.3
2,626,749	+				+0.2
2,626,750	-				+2.3
2,626,750	-				+0.7
2,626,750	-				-0.5
2,626,750	-				+0.1
2,626,750	-				+0.7
2,626,819	+				+0.3
2,626,838	+				-0.6
2,626,838	+				+2.0
2,626,839	-				-0.0
2,626,839	-				+0.3
2,626,846	+				-1.2
2,626,846	+				-1.5
2,626,846	+				+0.5
2,626,846	+				+1.5
2,626,846	+				-3.1
2,626,846	+				-1.0
2,626,846	+				-0.0
2,626,846	+				+0.4
2,626,847	-				-0.5
2,626,853	+				+0.1
2,626,853	+				-1.6
2,626,853	+				-0.0
2,626,853	+				+1.3
2,626,853	+				+1.1
2,626,867	+				-0.3
2,626,868	+				-1.9
2,626,868	+				-0.8
2,626,868	+				-0.8
2,626,868	+				-0.0
2,626,868	+				+1.2
2,626,868	+				+1.5
2,626,868	+				+0.3
2,626,868	+				-2.1
2,626,868	+				-0.0
2,626,868	+				+0.5
2,626,868	+				+1.0
2,626,868	+				-0.4
2,626,869	-				+0.5
2,626,869	-				-0.2
2,626,869	-				-0.8
2,626,869	-				-2.4
2,626,869	-				-0.4
2,626,931	+	cydX	OKGIIK_12195	0.49	-0.0
2,626,931	+	cydX	OKGIIK_12195	0.49	+0.8
2,626,931	+	cydX	OKGIIK_12195	0.49	+0.7
2,626,932	-	cydX	OKGIIK_12195	0.50	+0.8
2,627,000	+				-1.8
2,627,000	+				-2.6
2,627,000	+				-0.6
2,627,001	-				-1.2
2,627,001	-				-1.5
2,627,001	-				+0.2
2,627,014	+				+0.6
2,627,014	+				-0.0
2,627,014	+				-0.0
2,627,014	+				-0.9
2,627,014	+				+1.3
2,627,015	-				+1.4
2,627,015	-				+0.3
2,627,015	-				+0.5
2,627,015	-				-1.7
2,627,015	-				+0.5
2,627,015	-				-1.3
2,627,170	+	pepP	OKGIIK_12200	0.11	-0.1
2,627,170	+	pepP	OKGIIK_12200	0.11	+0.7
2,627,170	+	pepP	OKGIIK_12200	0.11	+1.3
2,627,170	+	pepP	OKGIIK_12200	0.11	+0.3
2,627,170	+	pepP	OKGIIK_12200	0.11	-0.3
2,627,170	+	pepP	OKGIIK_12200	0.11	-0.0
2,627,170	+	pepP	OKGIIK_12200	0.11	+0.1
2,627,170	+	pepP	OKGIIK_12200	0.11	-2.3
2,627,170	+	pepP	OKGIIK_12200	0.11	-1.0
2,627,170	+	pepP	OKGIIK_12200	0.11	+0.8
2,627,170	+	pepP	OKGIIK_12200	0.11	+1.5
2,627,171	-	pepP	OKGIIK_12200	0.11	+2.3
2,627,171	-	pepP	OKGIIK_12200	0.11	+1.9
2,627,171	-	pepP	OKGIIK_12200	0.11	-0.3
2,627,171	-	pepP	OKGIIK_12200	0.11	+0.2
2,627,171	-	pepP	OKGIIK_12200	0.11	+1.9
2,627,171	-	pepP	OKGIIK_12200	0.11	+0.1
2,627,171	-	pepP	OKGIIK_12200	0.11	+1.6
2,627,171	-	pepP	OKGIIK_12200	0.11	+0.2
2,627,171	-	pepP	OKGIIK_12200	0.11	-0.3
2,627,171	-	pepP	OKGIIK_12200	0.11	+0.6
2,627,171	-	pepP	OKGIIK_12200	0.11	-0.5
2,627,171	-	pepP	OKGIIK_12200	0.11	+1.0
2,627,171	-	pepP	OKGIIK_12200	0.11	+0.3
2,627,171	-	pepP	OKGIIK_12200	0.11	-0.3
2,627,171	-	pepP	OKGIIK_12200	0.11	-1.3
2,627,171	-	pepP	OKGIIK_12200	0.11	-0.0
2,627,171	-	pepP	OKGIIK_12200	0.11	-1.2
2,627,237	-	pepP	OKGIIK_12200	0.16	+1.0
2,627,294	-	pepP	OKGIIK_12200	0.20	-0.0
2,627,294	-	pepP	OKGIIK_12200	0.20	+0.7
2,627,302	+	pepP	OKGIIK_12200	0.21	-1.2
2,627,302	+	pepP	OKGIIK_12200	0.21	+1.9
2,627,302	+	pepP	OKGIIK_12200	0.21	-0.1
2,627,302	+	pepP	OKGIIK_12200	0.21	+2.3
2,627,303	-	pepP	OKGIIK_12200	0.21	+1.9
2,627,303	-	pepP	OKGIIK_12200	0.21	-0.3
2,627,464	+	pepP	OKGIIK_12200	0.33	+0.3
2,627,464	+	pepP	OKGIIK_12200	0.33	+1.0
2,627,464	+	pepP	OKGIIK_12200	0.33	+0.7
2,627,464	+	pepP	OKGIIK_12200	0.33	+0.3
2,627,465	-	pepP	OKGIIK_12200	0.33	-1.0
2,627,465	-	pepP	OKGIIK_12200	0.33	+0.3
2,627,488	+	pepP	OKGIIK_12200	0.34	+0.5
2,627,489	-	pepP	OKGIIK_12200	0.34	+0.3
2,627,530	+	pepP	OKGIIK_12200	0.37	+0.1
2,627,530	+	pepP	OKGIIK_12200	0.37	+1.1
2,627,530	+	pepP	OKGIIK_12200	0.37	+0.3
2,627,530	+	pepP	OKGIIK_12200	0.37	+0.6
2,627,530	+	pepP	OKGIIK_12200	0.37	-0.9
2,627,530	+	pepP	OKGIIK_12200	0.37	+1.1
2,627,531	-	pepP	OKGIIK_12200	0.38	+0.3
2,627,531	-	pepP	OKGIIK_12200	0.38	-1.1
2,627,531	-	pepP	OKGIIK_12200	0.38	+0.4
2,627,531	-	pepP	OKGIIK_12200	0.38	+0.3
2,627,531	-	pepP	OKGIIK_12200	0.38	-0.0
2,627,531	-	pepP	OKGIIK_12200	0.38	-0.9
2,627,602	+	pepP	OKGIIK_12200	0.43	+1.9
2,627,603	-	pepP	OKGIIK_12200	0.43	+0.3
2,627,603	-	pepP	OKGIIK_12200	0.43	+2.0
2,627,603	-	pepP	OKGIIK_12200	0.43	-0.5
2,627,704	+	pepP	OKGIIK_12200	0.50	+0.6
2,627,704	+	pepP	OKGIIK_12200	0.50	+0.9
2,627,704	+	pepP	OKGIIK_12200	0.50	+0.5
2,627,704	+	pepP	OKGIIK_12200	0.50	-1.0
2,627,705	-	pepP	OKGIIK_12200	0.50	+0.2
2,627,705	-	pepP	OKGIIK_12200	0.50	+1.6
2,627,705	-	pepP	OKGIIK_12200	0.50	-0.1
2,627,705	-	pepP	OKGIIK_12200	0.50	+0.9
2,627,806	+	pepP	OKGIIK_12200	0.57	-0.2
2,627,806	+	pepP	OKGIIK_12200	0.57	+0.4
2,627,806	+	pepP	OKGIIK_12200	0.57	-0.5
2,627,807	-	pepP	OKGIIK_12200	0.58	-0.8
2,627,944	+	pepP	OKGIIK_12200	0.67	-0.3
2,627,944	+	pepP	OKGIIK_12200	0.67	+0.3
2,627,944	+	pepP	OKGIIK_12200	0.67	-0.3
2,627,944	+	pepP	OKGIIK_12200	0.67	-0.3
2,627,944	+	pepP	OKGIIK_12200	0.67	-0.0
2,627,944	+	pepP	OKGIIK_12200	0.67	-0.4
2,627,944	+	pepP	OKGIIK_12200	0.67	+1.4
2,627,944	+	pepP	OKGIIK_12200	0.67	-2.5
2,627,944	+	pepP	OKGIIK_12200	0.67	+0.3
2,627,945	-	pepP	OKGIIK_12200	0.68	+0.8
2,627,945	-	pepP	OKGIIK_12200	0.68	+1.1
2,628,023	-	pepP	OKGIIK_12200	0.73	+0.1
2,628,023	-	pepP	OKGIIK_12200	0.73	+0.3
2,628,172	+	pepP	OKGIIK_12200	0.84	+1.3
2,628,172	+	pepP	OKGIIK_12200	0.84	+0.7
2,628,172	+	pepP	OKGIIK_12200	0.84	-0.4
2,628,172	+	pepP	OKGIIK_12200	0.84	+0.2
2,628,173	-	pepP	OKGIIK_12200	0.84	+0.1
2,628,173	-	pepP	OKGIIK_12200	0.84	+0.3
2,628,173	-	pepP	OKGIIK_12200	0.84	-0.3
2,628,399	+				-1.8
2,628,399	+				-1.0
2,628,399	+				+0.3
2,628,399	+				+0.5
2,628,399	+				-1.3
2,628,399	+				-0.4
2,628,400	-				+0.3
2,628,400	-				+0.3
2,628,400	-				+0.4
2,628,400	-				+1.7
2,628,811	-		OKGIIK_12205	0.82	+0.5
2,628,811	-		OKGIIK_12205	0.82	-0.7
2,628,946	+				+0.3
2,628,946	+				+0.4
2,628,946	+				+0.3
2,628,946	+				-0.5
2,628,946	+				-0.4
2,628,947	-				-2.0
2,628,947	-				-0.7
2,628,947	-				+0.1
2,628,947	-				+0.7
2,628,999	+				-0.7
2,628,999	+				-1.8
2,628,999	+				-0.8
2,629,000	-				-0.7
2,629,000	-				-0.0
2,629,001	+				-0.2
2,629,001	+				-0.8
2,629,001	+				+0.7
2,629,001	+				+1.2
2,629,001	+				+1.0
2,629,001	+				-0.6
2,629,001	+				+0.5
2,629,001	+				-1.4
2,629,252	+				-2.0
2,629,252	+				-1.7
2,629,252	+				+0.3
2,629,252	+				+0.3
2,629,252	+				-0.1
2,629,252	+				-1.7
2,629,252	+				+0.3
2,629,253	-				-0.4