Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_09820

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_09815 and OKGIIK_09820 are separated by 104 nucleotidesOKGIIK_09820 and OKGIIK_09825 overlap by 4 nucleotides OKGIIK_09815: OKGIIK_09815 - Leucine--tRNA ligase, at 2,114,934 to 2,117,573 _09815 OKGIIK_09820: OKGIIK_09820 - ABC-trans-aux domain-containing protein, at 2,117,678 to 2,118,310 _09820 OKGIIK_09825: OKGIIK_09825 - Mammalian cell entry protein, at 2,118,307 to 2,119,995 _09825 Position (kb) 2117 2118 2119Strain fitness (log2 ratio) -2 -1 0 1 2at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.892 kb on + strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2117.893 kb on - strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.213 kb on + strand, within OKGIIK_09820at 2118.214 kb on - strand, within OKGIIK_09820at 2118.214 kb on - strand, within OKGIIK_09820at 2118.214 kb on - strand, within OKGIIK_09820at 2118.214 kb on - strand, within OKGIIK_09820at 2118.214 kb on - strand, within OKGIIK_09820at 2118.214 kb on - strand, within OKGIIK_09820at 2118.214 kb on - strand, within OKGIIK_09820at 2118.214 kb on - strand, within OKGIIK_09820at 2118.214 kb on - strand, within OKGIIK_09820at 2118.214 kb on - strand, within OKGIIK_09820at 2118.214 kb on - strand, within OKGIIK_09820at 2118.216 kb on + strand, within OKGIIK_09820at 2118.216 kb on + strand, within OKGIIK_09820at 2118.216 kb on + strand, within OKGIIK_09820at 2118.216 kb on + strand, within OKGIIK_09820at 2118.216 kb on + strand, within OKGIIK_09820at 2118.216 kb on + strand, within OKGIIK_09820at 2118.216 kb on + strand, within OKGIIK_09820at 2118.216 kb on + strand, within OKGIIK_09820at 2118.217 kb on - strand, within OKGIIK_09820at 2118.217 kb on - strand, within OKGIIK_09820at 2118.217 kb on - strand, within OKGIIK_09820at 2118.217 kb on - strand, within OKGIIK_09820at 2118.217 kb on - strand, within OKGIIK_09820at 2118.217 kb on - strand, within OKGIIK_09820at 2118.217 kb on - strand, within OKGIIK_09820at 2118.413 kb on + strandat 2118.414 kb on - strandat 2118.791 kb on + strand, within OKGIIK_09825at 2118.791 kb on + strand, within OKGIIK_09825at 2118.791 kb on + strand, within OKGIIK_09825at 2118.791 kb on + strand, within OKGIIK_09825at 2118.791 kb on + strand, within OKGIIK_09825at 2118.791 kb on + strand, within OKGIIK_09825at 2118.791 kb on + strand, within OKGIIK_09825at 2118.791 kb on + strand, within OKGIIK_09825at 2118.792 kb on + strand, within OKGIIK_09825at 2118.792 kb on - strand, within OKGIIK_09825at 2118.792 kb on - strand, within OKGIIK_09825at 2118.792 kb on - strand, within OKGIIK_09825at 2118.792 kb on - strand, within OKGIIK_09825at 2118.792 kb on - strand, within OKGIIK_09825at 2118.792 kb on - strand, within OKGIIK_09825at 2118.792 kb on - strand, within OKGIIK_09825at 2118.792 kb on - strand, within OKGIIK_09825at 2118.792 kb on - strand, within OKGIIK_09825at 2118.792 kb on - strand, within OKGIIK_09825at 2118.792 kb on - strand, within OKGIIK_09825at 2118.792 kb on - strand, within OKGIIK_09825at 2118.921 kb on - strand, within OKGIIK_09825at 2118.944 kb on + strand, within OKGIIK_09825at 2118.944 kb on + strand, within OKGIIK_09825at 2118.944 kb on + strand, within OKGIIK_09825at 2118.945 kb on - strand, within OKGIIK_09825at 2118.945 kb on - strand, within OKGIIK_09825at 2118.992 kb on + strand, within OKGIIK_09825at 2118.992 kb on + strand, within OKGIIK_09825at 2118.993 kb on - strand, within OKGIIK_09825at 2119.097 kb on + strand, within OKGIIK_09825at 2119.097 kb on + strand, within OKGIIK_09825at 2119.097 kb on + strand, within OKGIIK_09825at 2119.097 kb on + strand, within OKGIIK_09825at 2119.097 kb on + strand, within OKGIIK_09825at 2119.097 kb on + strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.098 kb on - strand, within OKGIIK_09825at 2119.155 kb on - strand, within OKGIIK_09825at 2119.155 kb on - strand, within OKGIIK_09825at 2119.155 kb on - strand, within OKGIIK_09825

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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2,117,892 + OKGIIK_09820 0.34 +1.1
2,117,892 + OKGIIK_09820 0.34 +0.5
2,117,892 + OKGIIK_09820 0.34 -0.6
2,117,892 + OKGIIK_09820 0.34 +1.4
2,117,892 + OKGIIK_09820 0.34 -0.6
2,117,892 + OKGIIK_09820 0.34 -0.2
2,117,892 + OKGIIK_09820 0.34 +0.4
2,117,892 + OKGIIK_09820 0.34 +0.6
2,117,892 + OKGIIK_09820 0.34 -1.0
2,117,892 + OKGIIK_09820 0.34 +0.4
2,117,892 + OKGIIK_09820 0.34 +0.4
2,117,892 + OKGIIK_09820 0.34 -0.6
2,117,892 + OKGIIK_09820 0.34 +1.9
2,117,892 + OKGIIK_09820 0.34 +0.8
2,117,892 + OKGIIK_09820 0.34 +1.4
2,117,892 + OKGIIK_09820 0.34 -1.2
2,117,892 + OKGIIK_09820 0.34 -0.2
2,117,892 + OKGIIK_09820 0.34 +0.5
2,117,892 + OKGIIK_09820 0.34 +0.9
2,117,892 + OKGIIK_09820 0.34 -0.2
2,117,892 + OKGIIK_09820 0.34 +0.8
2,117,892 + OKGIIK_09820 0.34 -0.4
2,117,892 + OKGIIK_09820 0.34 +1.4
2,117,893 - OKGIIK_09820 0.34 -0.6
2,117,893 - OKGIIK_09820 0.34 +0.4
2,117,893 - OKGIIK_09820 0.34 -0.0
2,117,893 - OKGIIK_09820 0.34 -0.1
2,117,893 - OKGIIK_09820 0.34 -1.2
2,117,893 - OKGIIK_09820 0.34 -0.4
2,117,893 - OKGIIK_09820 0.34 +0.2
2,117,893 - OKGIIK_09820 0.34 +2.4
2,117,893 - OKGIIK_09820 0.34 +1.4
2,117,893 - OKGIIK_09820 0.34 +1.0
2,117,893 - OKGIIK_09820 0.34 +1.0
2,117,893 - OKGIIK_09820 0.34 +2.1
2,117,893 - OKGIIK_09820 0.34 -0.1
2,117,893 - OKGIIK_09820 0.34 -0.6
2,117,893 - OKGIIK_09820 0.34 +1.0
2,117,893 - OKGIIK_09820 0.34 -0.1
2,117,893 - OKGIIK_09820 0.34 +0.4
2,117,893 - OKGIIK_09820 0.34 +0.4
2,117,893 - OKGIIK_09820 0.34 -0.1
2,117,893 - OKGIIK_09820 0.34 +0.2
2,117,893 - OKGIIK_09820 0.34 +0.2
2,117,893 - OKGIIK_09820 0.34 +1.0
2,117,893 - OKGIIK_09820 0.34 -1.3
2,117,893 - OKGIIK_09820 0.34 -0.2
2,117,893 - OKGIIK_09820 0.34 +2.7
2,117,893 - OKGIIK_09820 0.34 +0.0
2,117,893 - OKGIIK_09820 0.34 +0.9
2,117,893 - OKGIIK_09820 0.34 +1.6
2,117,893 - OKGIIK_09820 0.34 +1.5
2,117,893 - OKGIIK_09820 0.34 +1.9
2,117,893 - OKGIIK_09820 0.34 +2.4
2,118,213 + OKGIIK_09820 0.85 -1.7
2,118,213 + OKGIIK_09820 0.85 +0.4
2,118,213 + OKGIIK_09820 0.85 +0.5
2,118,213 + OKGIIK_09820 0.85 +0.9
2,118,213 + OKGIIK_09820 0.85 -0.7
2,118,213 + OKGIIK_09820 0.85 +0.0
2,118,213 + OKGIIK_09820 0.85 +1.4
2,118,213 + OKGIIK_09820 0.85 -0.8
2,118,213 + OKGIIK_09820 0.85 +0.8
2,118,213 + OKGIIK_09820 0.85 +0.8
2,118,213 + OKGIIK_09820 0.85 -2.0
2,118,213 + OKGIIK_09820 0.85 -0.6
2,118,213 + OKGIIK_09820 0.85 +0.4
2,118,213 + OKGIIK_09820 0.85 -0.2
2,118,214 - OKGIIK_09820 0.85 -0.1
2,118,214 - OKGIIK_09820 0.85 +0.4
2,118,214 - OKGIIK_09820 0.85 +0.0
2,118,214 - OKGIIK_09820 0.85 +0.4
2,118,214 - OKGIIK_09820 0.85 +0.5
2,118,214 - OKGIIK_09820 0.85 +1.0
2,118,214 - OKGIIK_09820 0.85 +1.0
2,118,214 - OKGIIK_09820 0.85 +0.1
2,118,214 - OKGIIK_09820 0.85 +0.6
2,118,214 - OKGIIK_09820 0.85 +0.9
2,118,214 - OKGIIK_09820 0.85 -0.2
2,118,216 + OKGIIK_09820 0.85 +1.8
2,118,216 + OKGIIK_09820 0.85 -1.1
2,118,216 + OKGIIK_09820 0.85 +0.1
2,118,216 + OKGIIK_09820 0.85 +0.1
2,118,216 + OKGIIK_09820 0.85 +0.6
2,118,216 + OKGIIK_09820 0.85 +1.8
2,118,216 + OKGIIK_09820 0.85 +1.1
2,118,216 + OKGIIK_09820 0.85 -1.2
2,118,217 - OKGIIK_09820 0.85 -1.6
2,118,217 - OKGIIK_09820 0.85 +0.2
2,118,217 - OKGIIK_09820 0.85 +1.6
2,118,217 - OKGIIK_09820 0.85 +0.9
2,118,217 - OKGIIK_09820 0.85 -1.4
2,118,217 - OKGIIK_09820 0.85 -1.2
2,118,217 - OKGIIK_09820 0.85 -1.0
2,118,413 + +0.6
2,118,414 - +0.7
2,118,791 + OKGIIK_09825 0.29 +0.4
2,118,791 + OKGIIK_09825 0.29 +1.0
2,118,791 + OKGIIK_09825 0.29 +0.6
2,118,791 + OKGIIK_09825 0.29 +1.5
2,118,791 + OKGIIK_09825 0.29 +1.7
2,118,791 + OKGIIK_09825 0.29 +0.3
2,118,791 + OKGIIK_09825 0.29 -1.2
2,118,791 + OKGIIK_09825 0.29 -0.1
2,118,792 + OKGIIK_09825 0.29 +0.3
2,118,792 - OKGIIK_09825 0.29 -0.4
2,118,792 - OKGIIK_09825 0.29 +0.0
2,118,792 - OKGIIK_09825 0.29 +1.3
2,118,792 - OKGIIK_09825 0.29 +0.0
2,118,792 - OKGIIK_09825 0.29 +1.4
2,118,792 - OKGIIK_09825 0.29 +0.9
2,118,792 - OKGIIK_09825 0.29 +1.2
2,118,792 - OKGIIK_09825 0.29 +1.1
2,118,792 - OKGIIK_09825 0.29 +0.0
2,118,792 - OKGIIK_09825 0.29 +0.6
2,118,792 - OKGIIK_09825 0.29 -0.2
2,118,792 - OKGIIK_09825 0.29 +0.0
2,118,921 - OKGIIK_09825 0.36 +0.7
2,118,944 + OKGIIK_09825 0.38 +1.9
2,118,944 + OKGIIK_09825 0.38 -0.2
2,118,944 + OKGIIK_09825 0.38 -0.4
2,118,945 - OKGIIK_09825 0.38 +0.9
2,118,945 - OKGIIK_09825 0.38 +0.0
2,118,992 + OKGIIK_09825 0.41 +1.4
2,118,992 + OKGIIK_09825 0.41 +0.6
2,118,993 - OKGIIK_09825 0.41 +0.2
2,119,097 + OKGIIK_09825 0.47 +0.8
2,119,097 + OKGIIK_09825 0.47 -0.6
2,119,097 + OKGIIK_09825 0.47 +0.9
2,119,097 + OKGIIK_09825 0.47 +0.6
2,119,097 + OKGIIK_09825 0.47 -2.0
2,119,097 + OKGIIK_09825 0.47 -1.1
2,119,098 - OKGIIK_09825 0.47 +1.1
2,119,098 - OKGIIK_09825 0.47 -0.5
2,119,098 - OKGIIK_09825 0.47 +0.0
2,119,098 - OKGIIK_09825 0.47 -2.1
2,119,098 - OKGIIK_09825 0.47 -0.3
2,119,098 - OKGIIK_09825 0.47 -0.9
2,119,098 - OKGIIK_09825 0.47 +1.4
2,119,098 - OKGIIK_09825 0.47 -0.8
2,119,098 - OKGIIK_09825 0.47 +0.0
2,119,098 - OKGIIK_09825 0.47 +1.9
2,119,098 - OKGIIK_09825 0.47 +1.0
2,119,098 - OKGIIK_09825 0.47 +0.6
2,119,098 - OKGIIK_09825 0.47 -0.4
2,119,098 - OKGIIK_09825 0.47 -1.5
2,119,098 - OKGIIK_09825 0.47 -1.0
2,119,098 - OKGIIK_09825 0.47 -0.8
2,119,155 - OKGIIK_09825 0.50 +0.8
2,119,155 - OKGIIK_09825 0.50 +0.6
2,119,155 - OKGIIK_09825 0.50 -1.8

Or see this region's nucleotide sequence