Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08975

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_08970 and OKGIIK_08975 are separated by 365 nucleotidesOKGIIK_08975 and OKGIIK_08980 are separated by 41 nucleotides OKGIIK_08970: OKGIIK_08970 - addiction module protein, at 1,929,510 to 1,930,634 _08970 OKGIIK_08975: OKGIIK_08975 - hypothetical protein, at 1,931,000 to 1,931,263 _08975 OKGIIK_08980: OKGIIK_08980 - Sulfatase-modifying factor protein, at 1,931,305 to 1,933,242 _08980 Position (kb) 1930 1931 1932Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1930.072 kb on + strand, within OKGIIK_08970at 1930.072 kb on + strand, within OKGIIK_08970at 1930.073 kb on - strand, within OKGIIK_08970at 1930.183 kb on + strand, within OKGIIK_08970at 1930.183 kb on + strand, within OKGIIK_08970at 1930.183 kb on + strand, within OKGIIK_08970at 1930.184 kb on - strand, within OKGIIK_08970at 1930.184 kb on - strand, within OKGIIK_08970at 1930.342 kb on + strand, within OKGIIK_08970at 1930.342 kb on + strand, within OKGIIK_08970at 1930.342 kb on + strand, within OKGIIK_08970at 1930.343 kb on - strand, within OKGIIK_08970at 1930.343 kb on - strand, within OKGIIK_08970at 1930.343 kb on - strand, within OKGIIK_08970at 1930.693 kb on + strandat 1930.694 kb on - strandat 1930.741 kb on + strandat 1930.741 kb on + strandat 1930.742 kb on - strandat 1930.742 kb on - strandat 1930.742 kb on - strandat 1930.742 kb on - strandat 1930.742 kb on - strandat 1930.742 kb on - strandat 1930.742 kb on - strandat 1930.742 kb on - strandat 1930.742 kb on - strandat 1930.742 kb on - strandat 1930.742 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1930.744 kb on - strandat 1931.091 kb on + strand, within OKGIIK_08975at 1931.091 kb on + strand, within OKGIIK_08975at 1931.091 kb on + strand, within OKGIIK_08975at 1931.091 kb on + strand, within OKGIIK_08975at 1931.091 kb on + strand, within OKGIIK_08975at 1931.091 kb on + strand, within OKGIIK_08975at 1931.091 kb on + strand, within OKGIIK_08975at 1931.091 kb on + strand, within OKGIIK_08975at 1931.092 kb on - strand, within OKGIIK_08975at 1931.092 kb on - strand, within OKGIIK_08975at 1931.092 kb on - strand, within OKGIIK_08975at 1931.092 kb on - strand, within OKGIIK_08975at 1931.092 kb on - strand, within OKGIIK_08975at 1931.092 kb on - strand, within OKGIIK_08975at 1931.232 kb on + strand, within OKGIIK_08975at 1931.232 kb on + strand, within OKGIIK_08975at 1931.232 kb on + strand, within OKGIIK_08975at 1931.232 kb on + strand, within OKGIIK_08975at 1931.232 kb on + strand, within OKGIIK_08975at 1931.232 kb on + strand, within OKGIIK_08975at 1931.232 kb on + strand, within OKGIIK_08975at 1931.232 kb on + strand, within OKGIIK_08975at 1931.232 kb on + strand, within OKGIIK_08975at 1931.232 kb on + strand, within OKGIIK_08975at 1931.232 kb on + strand, within OKGIIK_08975at 1931.232 kb on + strand, within OKGIIK_08975at 1931.233 kb on - strand, within OKGIIK_08975at 1931.233 kb on - strand, within OKGIIK_08975at 1931.233 kb on - strand, within OKGIIK_08975at 1931.233 kb on - strand, within OKGIIK_08975at 1931.233 kb on - strand, within OKGIIK_08975at 1931.233 kb on - strand, within OKGIIK_08975at 1931.233 kb on - strand, within OKGIIK_08975at 1931.233 kb on - strand, within OKGIIK_08975at 1931.306 kb on + strandat 1931.306 kb on + strandat 1931.307 kb on - strandat 1931.372 kb on + strandat 1931.373 kb on - strandat 1931.373 kb on - strandat 1931.480 kb on + strandat 1931.480 kb on + strandat 1931.480 kb on + strandat 1931.480 kb on + strandat 1931.480 kb on + strandat 1931.480 kb on + strandat 1931.480 kb on + strandat 1931.480 kb on + strandat 1931.480 kb on + strandat 1931.480 kb on + strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.481 kb on - strandat 1931.534 kb on + strand, within OKGIIK_08980at 1931.534 kb on + strand, within OKGIIK_08980at 1931.535 kb on - strand, within OKGIIK_08980at 1931.535 kb on - strand, within OKGIIK_08980at 1931.535 kb on - strand, within OKGIIK_08980at 1931.535 kb on - strand, within OKGIIK_08980at 1931.535 kb on - strand, within OKGIIK_08980at 1931.585 kb on + strand, within OKGIIK_08980at 1931.729 kb on + strand, within OKGIIK_08980at 1931.729 kb on + strand, within OKGIIK_08980at 1931.729 kb on + strand, within OKGIIK_08980at 1931.730 kb on - strand, within OKGIIK_08980at 1931.795 kb on + strand, within OKGIIK_08980at 1931.795 kb on + strand, within OKGIIK_08980at 1931.796 kb on - strand, within OKGIIK_08980at 1931.796 kb on - strand, within OKGIIK_08980at 1931.861 kb on + strand, within OKGIIK_08980at 1931.861 kb on + strand, within OKGIIK_08980at 1931.861 kb on + strand, within OKGIIK_08980at 1931.861 kb on + strand, within OKGIIK_08980at 1931.861 kb on + strand, within OKGIIK_08980at 1931.862 kb on - strand, within OKGIIK_08980at 1931.918 kb on + strand, within OKGIIK_08980at 1931.918 kb on + strand, within OKGIIK_08980at 1931.918 kb on + strand, within OKGIIK_08980at 1931.918 kb on + strand, within OKGIIK_08980at 1931.957 kb on + strand, within OKGIIK_08980at 1931.957 kb on + strand, within OKGIIK_08980at 1931.957 kb on + strand, within OKGIIK_08980at 1931.957 kb on + strand, within OKGIIK_08980at 1931.958 kb on - strand, within OKGIIK_08980at 1932.155 kb on + strand, within OKGIIK_08980at 1932.155 kb on + strand, within OKGIIK_08980at 1932.155 kb on + strand, within OKGIIK_08980at 1932.155 kb on + strand, within OKGIIK_08980at 1932.156 kb on - strand, within OKGIIK_08980at 1932.156 kb on - strand, within OKGIIK_08980at 1932.156 kb on - strand, within OKGIIK_08980at 1932.156 kb on - strand, within OKGIIK_08980at 1932.185 kb on + strand, within OKGIIK_08980at 1932.185 kb on + strand, within OKGIIK_08980at 1932.185 kb on + strand, within OKGIIK_08980at 1932.185 kb on + strand, within OKGIIK_08980at 1932.185 kb on + strand, within OKGIIK_08980at 1932.185 kb on + strand, within OKGIIK_08980at 1932.185 kb on + strand, within OKGIIK_08980at 1932.185 kb on + strand, within OKGIIK_08980at 1932.186 kb on - strand, within OKGIIK_08980at 1932.186 kb on - strand, within OKGIIK_08980at 1932.186 kb on - strand, within OKGIIK_08980at 1932.186 kb on - strand, within OKGIIK_08980at 1932.186 kb on - strand, within OKGIIK_08980at 1932.186 kb on - strand, within OKGIIK_08980at 1932.186 kb on - strand, within OKGIIK_08980at 1932.186 kb on - strand, within OKGIIK_08980at 1932.186 kb on - strand, within OKGIIK_08980at 1932.186 kb on - strand, within OKGIIK_08980at 1932.195 kb on - strand, within OKGIIK_08980at 1932.195 kb on - strand, within OKGIIK_08980

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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1,930,072 + OKGIIK_08970 0.50 -0.4
1,930,072 + OKGIIK_08970 0.50 +0.4
1,930,073 - OKGIIK_08970 0.50 +0.8
1,930,183 + OKGIIK_08970 0.60 +0.3
1,930,183 + OKGIIK_08970 0.60 +0.1
1,930,183 + OKGIIK_08970 0.60 -1.1
1,930,184 - OKGIIK_08970 0.60 -1.1
1,930,184 - OKGIIK_08970 0.60 +0.1
1,930,342 + OKGIIK_08970 0.74 +0.6
1,930,342 + OKGIIK_08970 0.74 +0.4
1,930,342 + OKGIIK_08970 0.74 -0.8
1,930,343 - OKGIIK_08970 0.74 -0.7
1,930,343 - OKGIIK_08970 0.74 -0.4
1,930,343 - OKGIIK_08970 0.74 +2.1
1,930,693 + -0.4
1,930,694 - +0.1
1,930,741 + -0.2
1,930,741 + -1.8
1,930,742 - +0.3
1,930,742 - +1.5
1,930,742 - -0.1
1,930,742 - -0.6
1,930,742 - +1.2
1,930,742 - +0.4
1,930,742 - -0.4
1,930,742 - -0.4
1,930,742 - -0.6
1,930,742 - -0.4
1,930,742 - -0.8
1,930,744 - -0.8
1,930,744 - -0.8
1,930,744 - +2.1
1,930,744 - -0.2
1,930,744 - -0.9
1,930,744 - +1.9
1,930,744 - -1.3
1,930,744 - +1.4
1,930,744 - -0.3
1,930,744 - +1.4
1,930,744 - +0.1
1,930,744 - +0.4
1,930,744 - +1.4
1,930,744 - +0.5
1,930,744 - +0.1
1,930,744 - -0.4
1,930,744 - -1.0
1,930,744 - -0.9
1,930,744 - -0.9
1,930,744 - +0.3
1,930,744 - -0.3
1,930,744 - +1.4
1,930,744 - -0.6
1,930,744 - +0.2
1,930,744 - +0.4
1,930,744 - -2.4
1,930,744 - -0.8
1,930,744 - -0.6
1,930,744 - -0.8
1,930,744 - -1.3
1,930,744 - +1.4
1,930,744 - +1.8
1,930,744 - -0.3
1,930,744 - -1.5
1,930,744 - +0.4
1,931,091 + OKGIIK_08975 0.34 -0.6
1,931,091 + OKGIIK_08975 0.34 +0.9
1,931,091 + OKGIIK_08975 0.34 -0.6
1,931,091 + OKGIIK_08975 0.34 -0.2
1,931,091 + OKGIIK_08975 0.34 +0.7
1,931,091 + OKGIIK_08975 0.34 +0.4
1,931,091 + OKGIIK_08975 0.34 -0.8
1,931,091 + OKGIIK_08975 0.34 +0.6
1,931,092 - OKGIIK_08975 0.35 -0.6
1,931,092 - OKGIIK_08975 0.35 +0.9
1,931,092 - OKGIIK_08975 0.35 +0.1
1,931,092 - OKGIIK_08975 0.35 +0.4
1,931,092 - OKGIIK_08975 0.35 -3.6
1,931,092 - OKGIIK_08975 0.35 +0.7
1,931,232 + OKGIIK_08975 0.88 +0.8
1,931,232 + OKGIIK_08975 0.88 +1.4
1,931,232 + OKGIIK_08975 0.88 +0.3
1,931,232 + OKGIIK_08975 0.88 -0.3
1,931,232 + OKGIIK_08975 0.88 -1.2
1,931,232 + OKGIIK_08975 0.88 +1.1
1,931,232 + OKGIIK_08975 0.88 -0.6
1,931,232 + OKGIIK_08975 0.88 +0.3
1,931,232 + OKGIIK_08975 0.88 +1.2
1,931,232 + OKGIIK_08975 0.88 -0.6
1,931,232 + OKGIIK_08975 0.88 -0.2
1,931,232 + OKGIIK_08975 0.88 +0.5
1,931,233 - OKGIIK_08975 0.88 +0.5
1,931,233 - OKGIIK_08975 0.88 +1.5
1,931,233 - OKGIIK_08975 0.88 +3.0
1,931,233 - OKGIIK_08975 0.88 -0.5
1,931,233 - OKGIIK_08975 0.88 +1.2
1,931,233 - OKGIIK_08975 0.88 +1.2
1,931,233 - OKGIIK_08975 0.88 -1.6
1,931,233 - OKGIIK_08975 0.88 -0.6
1,931,306 + +1.2
1,931,306 + +1.4
1,931,307 - -0.6
1,931,372 + -1.3
1,931,373 - -0.2
1,931,373 - +1.9
1,931,480 + -1.8
1,931,480 + -0.9
1,931,480 + +0.5
1,931,480 + -1.3
1,931,480 + -0.8
1,931,480 + +0.6
1,931,480 + -0.9
1,931,480 + +1.2
1,931,480 + +0.1
1,931,480 + -0.5
1,931,481 - +0.1
1,931,481 - +1.2
1,931,481 - +0.6
1,931,481 - -1.5
1,931,481 - +0.1
1,931,481 - +2.0
1,931,481 - -0.8
1,931,481 - -0.9
1,931,481 - -0.4
1,931,481 - -1.4
1,931,481 - -0.3
1,931,481 - +0.2
1,931,481 - +1.9
1,931,481 - -1.5
1,931,481 - -0.9
1,931,481 - -0.3
1,931,481 - +0.4
1,931,481 - -0.2
1,931,481 - -0.0
1,931,481 - +0.1
1,931,481 - +0.1
1,931,481 - -2.1
1,931,534 + OKGIIK_08980 0.12 -0.1
1,931,534 + OKGIIK_08980 0.12 +0.0
1,931,535 - OKGIIK_08980 0.12 -0.7
1,931,535 - OKGIIK_08980 0.12 +0.6
1,931,535 - OKGIIK_08980 0.12 -2.1
1,931,535 - OKGIIK_08980 0.12 -1.1
1,931,535 - OKGIIK_08980 0.12 +1.0
1,931,585 + OKGIIK_08980 0.14 +0.1
1,931,729 + OKGIIK_08980 0.22 -0.3
1,931,729 + OKGIIK_08980 0.22 -0.1
1,931,729 + OKGIIK_08980 0.22 -0.6
1,931,730 - OKGIIK_08980 0.22 -0.3
1,931,795 + OKGIIK_08980 0.25 -1.1
1,931,795 + OKGIIK_08980 0.25 +0.6
1,931,796 - OKGIIK_08980 0.25 -0.6
1,931,796 - OKGIIK_08980 0.25 -1.4
1,931,861 + OKGIIK_08980 0.29 +0.1
1,931,861 + OKGIIK_08980 0.29 -0.8
1,931,861 + OKGIIK_08980 0.29 -0.6
1,931,861 + OKGIIK_08980 0.29 +0.6
1,931,861 + OKGIIK_08980 0.29 -1.7
1,931,862 - OKGIIK_08980 0.29 -0.1
1,931,918 + OKGIIK_08980 0.32 +0.2
1,931,918 + OKGIIK_08980 0.32 -0.4
1,931,918 + OKGIIK_08980 0.32 -0.1
1,931,918 + OKGIIK_08980 0.32 -0.1
1,931,957 + OKGIIK_08980 0.34 -1.1
1,931,957 + OKGIIK_08980 0.34 +1.1
1,931,957 + OKGIIK_08980 0.34 +0.1
1,931,957 + OKGIIK_08980 0.34 +0.5
1,931,958 - OKGIIK_08980 0.34 +0.8
1,932,155 + OKGIIK_08980 0.44 -0.1
1,932,155 + OKGIIK_08980 0.44 -0.6
1,932,155 + OKGIIK_08980 0.44 +0.5
1,932,155 + OKGIIK_08980 0.44 -0.6
1,932,156 - OKGIIK_08980 0.44 +1.1
1,932,156 - OKGIIK_08980 0.44 -1.7
1,932,156 - OKGIIK_08980 0.44 -1.2
1,932,156 - OKGIIK_08980 0.44 -1.2
1,932,185 + OKGIIK_08980 0.45 +0.6
1,932,185 + OKGIIK_08980 0.45 +0.1
1,932,185 + OKGIIK_08980 0.45 -1.0
1,932,185 + OKGIIK_08980 0.45 +0.2
1,932,185 + OKGIIK_08980 0.45 +0.2
1,932,185 + OKGIIK_08980 0.45 +0.4
1,932,185 + OKGIIK_08980 0.45 +0.3
1,932,185 + OKGIIK_08980 0.45 -1.4
1,932,186 - OKGIIK_08980 0.45 -0.8
1,932,186 - OKGIIK_08980 0.45 +0.1
1,932,186 - OKGIIK_08980 0.45 +2.4
1,932,186 - OKGIIK_08980 0.45 -0.3
1,932,186 - OKGIIK_08980 0.45 +0.6
1,932,186 - OKGIIK_08980 0.45 +0.8
1,932,186 - OKGIIK_08980 0.45 -1.5
1,932,186 - OKGIIK_08980 0.45 +0.1
1,932,186 - OKGIIK_08980 0.45 -0.4
1,932,186 - OKGIIK_08980 0.45 -0.2
1,932,195 - OKGIIK_08980 0.46 -0.4
1,932,195 - OKGIIK_08980 0.46 +1.1

Or see this region's nucleotide sequence