Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08950

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_08945 and OKGIIK_08950 are separated by 90 nucleotidesOKGIIK_08950 and OKGIIK_08955 are separated by 316 nucleotides OKGIIK_08945: OKGIIK_08945 - Integrase, at 1,921,172 to 1,922,200 _08945 OKGIIK_08950: OKGIIK_08950 - tRNA-Xxx, at 1,922,291 to 1,922,376 _08950 OKGIIK_08955: OKGIIK_08955 - Type I restriction enzyme endonuclease subunit, at 1,922,693 to 1,926,112 _08955 Position (kb) 1922 1923Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1921.301 kb on + strand, within OKGIIK_08945at 1921.302 kb on - strand, within OKGIIK_08945at 1921.395 kb on - strand, within OKGIIK_08945at 1921.529 kb on + strand, within OKGIIK_08945at 1921.530 kb on - strand, within OKGIIK_08945at 1921.530 kb on - strand, within OKGIIK_08945at 1921.530 kb on - strand, within OKGIIK_08945at 1921.533 kb on + strand, within OKGIIK_08945at 1921.533 kb on + strand, within OKGIIK_08945at 1921.534 kb on - strand, within OKGIIK_08945at 1921.534 kb on - strand, within OKGIIK_08945at 1921.534 kb on - strand, within OKGIIK_08945at 1921.622 kb on + strand, within OKGIIK_08945at 1921.622 kb on + strand, within OKGIIK_08945at 1921.622 kb on + strand, within OKGIIK_08945at 1921.623 kb on - strand, within OKGIIK_08945at 1921.623 kb on - strand, within OKGIIK_08945at 1921.623 kb on - strand, within OKGIIK_08945at 1921.685 kb on + strand, within OKGIIK_08945at 1921.685 kb on + strand, within OKGIIK_08945at 1921.685 kb on + strand, within OKGIIK_08945at 1921.685 kb on + strand, within OKGIIK_08945at 1921.686 kb on - strand, within OKGIIK_08945at 1921.686 kb on - strand, within OKGIIK_08945at 1921.686 kb on - strand, within OKGIIK_08945at 1921.760 kb on + strand, within OKGIIK_08945at 1921.760 kb on + strand, within OKGIIK_08945at 1921.760 kb on + strand, within OKGIIK_08945at 1921.761 kb on - strand, within OKGIIK_08945at 1921.761 kb on - strand, within OKGIIK_08945at 1921.786 kb on + strand, within OKGIIK_08945at 1921.925 kb on + strand, within OKGIIK_08945at 1921.925 kb on + strand, within OKGIIK_08945at 1921.926 kb on - strand, within OKGIIK_08945at 1921.926 kb on - strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.990 kb on - strand, within OKGIIK_08945at 1922.156 kb on + strandat 1922.156 kb on + strandat 1922.156 kb on + strandat 1922.157 kb on - strandat 1922.157 kb on - strandat 1922.157 kb on - strandat 1922.157 kb on - strandat 1922.157 kb on - strandat 1922.228 kb on + strandat 1922.228 kb on + strandat 1922.229 kb on - strandat 1922.288 kb on + strandat 1922.289 kb on - strandat 1922.372 kb on + strandat 1922.663 kb on - strandat 1922.694 kb on + strandat 1922.695 kb on - strandat 1922.748 kb on + strandat 1922.748 kb on + strandat 1922.748 kb on + strandat 1922.748 kb on + strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1923.108 kb on + strand, within OKGIIK_08955at 1923.109 kb on - strand, within OKGIIK_08955at 1923.142 kb on - strand, within OKGIIK_08955at 1923.288 kb on + strand, within OKGIIK_08955at 1923.289 kb on - strand, within OKGIIK_08955at 1923.289 kb on - strand, within OKGIIK_08955

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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1,921,301 + OKGIIK_08945 0.13 +1.0
1,921,302 - OKGIIK_08945 0.13 +1.1
1,921,395 - OKGIIK_08945 0.22 -1.6
1,921,529 + OKGIIK_08945 0.35 -0.5
1,921,530 - OKGIIK_08945 0.35 +0.8
1,921,530 - OKGIIK_08945 0.35 -0.4
1,921,530 - OKGIIK_08945 0.35 -1.0
1,921,533 + OKGIIK_08945 0.35 +0.3
1,921,533 + OKGIIK_08945 0.35 +0.5
1,921,534 - OKGIIK_08945 0.35 +0.6
1,921,534 - OKGIIK_08945 0.35 -1.7
1,921,534 - OKGIIK_08945 0.35 +0.1
1,921,622 + OKGIIK_08945 0.44 -0.1
1,921,622 + OKGIIK_08945 0.44 +0.4
1,921,622 + OKGIIK_08945 0.44 +0.1
1,921,623 - OKGIIK_08945 0.44 +1.2
1,921,623 - OKGIIK_08945 0.44 -0.2
1,921,623 - OKGIIK_08945 0.44 -0.9
1,921,685 + OKGIIK_08945 0.50 -0.2
1,921,685 + OKGIIK_08945 0.50 -0.4
1,921,685 + OKGIIK_08945 0.50 -1.1
1,921,685 + OKGIIK_08945 0.50 -0.9
1,921,686 - OKGIIK_08945 0.50 -0.2
1,921,686 - OKGIIK_08945 0.50 -0.6
1,921,686 - OKGIIK_08945 0.50 -0.9
1,921,760 + OKGIIK_08945 0.57 +1.4
1,921,760 + OKGIIK_08945 0.57 +0.1
1,921,760 + OKGIIK_08945 0.57 -0.9
1,921,761 - OKGIIK_08945 0.57 +0.4
1,921,761 - OKGIIK_08945 0.57 +0.1
1,921,786 + OKGIIK_08945 0.60 -0.4
1,921,925 + OKGIIK_08945 0.73 -1.1
1,921,925 + OKGIIK_08945 0.73 +0.6
1,921,926 - OKGIIK_08945 0.73 -1.4
1,921,926 - OKGIIK_08945 0.73 +1.3
1,921,979 + OKGIIK_08945 0.78 -0.6
1,921,979 + OKGIIK_08945 0.78 -0.2
1,921,979 + OKGIIK_08945 0.78 +3.6
1,921,979 + OKGIIK_08945 0.78 +0.1
1,921,979 + OKGIIK_08945 0.78 +0.4
1,921,980 - OKGIIK_08945 0.79 +0.4
1,921,980 - OKGIIK_08945 0.79 +0.7
1,921,980 - OKGIIK_08945 0.79 +1.4
1,921,980 - OKGIIK_08945 0.79 +2.4
1,921,980 - OKGIIK_08945 0.79 -0.2
1,921,980 - OKGIIK_08945 0.79 +0.5
1,921,980 - OKGIIK_08945 0.79 -0.2
1,921,980 - OKGIIK_08945 0.79 +0.2
1,921,980 - OKGIIK_08945 0.79 -0.0
1,921,980 - OKGIIK_08945 0.79 +0.8
1,921,980 - OKGIIK_08945 0.79 -0.8
1,921,980 - OKGIIK_08945 0.79 -1.4
1,921,980 - OKGIIK_08945 0.79 +0.0
1,921,980 - OKGIIK_08945 0.79 +0.3
1,921,990 - OKGIIK_08945 0.79 -0.2
1,922,156 + -0.4
1,922,156 + -0.8
1,922,156 + -0.2
1,922,157 - +0.4
1,922,157 - +1.3
1,922,157 - -1.4
1,922,157 - -1.2
1,922,157 - +0.4
1,922,228 + +0.4
1,922,228 + +0.2
1,922,229 - +0.1
1,922,288 + +1.2
1,922,289 - -1.0
1,922,372 + -0.4
1,922,663 - +0.2
1,922,694 + -1.5
1,922,695 - -0.2
1,922,748 + -1.9
1,922,748 + +0.2
1,922,748 + +0.8
1,922,748 + -1.1
1,922,749 - +1.1
1,922,749 - -2.1
1,922,749 - -2.4
1,922,749 - -1.3
1,922,749 - +1.0
1,922,749 - -2.1
1,922,749 - -0.5
1,922,749 - -1.1
1,923,108 + OKGIIK_08955 0.12 -1.2
1,923,109 - OKGIIK_08955 0.12 +0.7
1,923,142 - OKGIIK_08955 0.13 -0.1
1,923,288 + OKGIIK_08955 0.17 +0.0
1,923,289 - OKGIIK_08955 0.17 +1.1
1,923,289 - OKGIIK_08955 0.17 +0.4

Or see this region's nucleotide sequence