Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08880

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_08860 and OKGIIK_08865 overlap by 4 nucleotidesOKGIIK_08865 and OKGIIK_08870 overlap by 4 nucleotidesOKGIIK_08870 and OKGIIK_08875 overlap by 4 nucleotidesOKGIIK_08875 and OKGIIK_08880 overlap by 4 nucleotidesOKGIIK_08880 and OKGIIK_08885 are separated by 11 nucleotidesOKGIIK_08885 and OKGIIK_08890 are separated by 44 nucleotides OKGIIK_08860: OKGIIK_08860 - hypothetical protein, at 1,913,933 to 1,914,229 _08860 OKGIIK_08865: OKGIIK_08865 - hypothetical protein, at 1,914,226 to 1,914,627 _08865 OKGIIK_08870: OKGIIK_08870 - hypothetical protein, at 1,914,624 to 1,914,887 _08870 OKGIIK_08875: OKGIIK_08875 - hypothetical protein, at 1,914,884 to 1,915,153 _08875 OKGIIK_08880: OKGIIK_08880 - hypothetical protein, at 1,915,150 to 1,915,389 _08880 OKGIIK_08885: OKGIIK_08885 - hypothetical protein, at 1,915,401 to 1,915,550 _08885 OKGIIK_08890: OKGIIK_08890 - DUF1351 domain-containing protein, at 1,915,595 to 1,916,752 _08890 Position (kb) 1915 1916Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1914.509 kb on - strand, within OKGIIK_08865at 1914.519 kb on - strand, within OKGIIK_08865at 1914.673 kb on - strand, within OKGIIK_08870at 1914.673 kb on - strand, within OKGIIK_08870at 1914.675 kb on + strand, within OKGIIK_08870at 1914.676 kb on - strand, within OKGIIK_08870at 1914.676 kb on - strand, within OKGIIK_08870at 1914.823 kb on - strand, within OKGIIK_08870at 1914.835 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1915.134 kb on - strandat 1915.134 kb on - strandat 1915.134 kb on - strandat 1915.268 kb on - strand, within OKGIIK_08880at 1915.268 kb on - strand, within OKGIIK_08880at 1915.289 kb on - strand, within OKGIIK_08880at 1915.289 kb on - strand, within OKGIIK_08880at 1915.289 kb on - strand, within OKGIIK_08880at 1915.649 kb on + strandat 1915.649 kb on + strandat 1915.649 kb on + strandat 1915.706 kb on + strandat 1915.706 kb on + strandat 1915.707 kb on - strandat 1916.159 kb on + strand, within OKGIIK_08890at 1916.159 kb on + strand, within OKGIIK_08890at 1916.159 kb on + strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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1,914,509 - OKGIIK_08865 0.70 -1.2
1,914,519 - OKGIIK_08865 0.73 +0.8
1,914,673 - OKGIIK_08870 0.19 -1.2
1,914,673 - OKGIIK_08870 0.19 +1.2
1,914,675 + OKGIIK_08870 0.19 -1.1
1,914,676 - OKGIIK_08870 0.20 -0.8
1,914,676 - OKGIIK_08870 0.20 -2.1
1,914,823 - OKGIIK_08870 0.75 -1.1
1,914,835 - OKGIIK_08870 0.80 -0.9
1,914,841 - OKGIIK_08870 0.82 +1.1
1,914,841 - OKGIIK_08870 0.82 +0.8
1,914,841 - OKGIIK_08870 0.82 +0.1
1,914,841 - OKGIIK_08870 0.82 -1.1
1,914,841 - OKGIIK_08870 0.82 -0.4
1,915,134 - -0.1
1,915,134 - +0.3
1,915,134 - -0.2
1,915,268 - OKGIIK_08880 0.49 -1.1
1,915,268 - OKGIIK_08880 0.49 -0.1
1,915,289 - OKGIIK_08880 0.58 +0.8
1,915,289 - OKGIIK_08880 0.58 +0.6
1,915,289 - OKGIIK_08880 0.58 +0.6
1,915,649 + +0.4
1,915,649 + -0.4
1,915,649 + -0.5
1,915,706 + +1.4
1,915,706 + -1.1
1,915,707 - +2.0
1,916,159 + OKGIIK_08890 0.49 -1.7
1,916,159 + OKGIIK_08890 0.49 +1.4
1,916,159 + OKGIIK_08890 0.49 +0.4
1,916,160 - OKGIIK_08890 0.49 -0.2
1,916,160 - OKGIIK_08890 0.49 -1.9
1,916,160 - OKGIIK_08890 0.49 -0.6
1,916,160 - OKGIIK_08890 0.49 +0.6
1,916,160 - OKGIIK_08890 0.49 -0.2
1,916,160 - OKGIIK_08890 0.49 -3.2

Or see this region's nucleotide sequence