Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08565

Experiment: R2A_PIPES pH 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKGIIK_08555 and ccmA are separated by 61 nucleotidesccmA and ccmB are separated by 153 nucleotidesccmB and ccmC are separated by 6 nucleotidesccmC and ccmD overlap by 4 nucleotidesccmD and ccmE are separated by 18 nucleotides OKGIIK_08555: OKGIIK_08555 - DUF3293 domain-containing protein, at 1,872,783 to 1,873,190 _08555 OKGIIK_08560: ccmA - cytochrome c biogenesis heme-transporting ATPase CcmA, at 1,873,252 to 1,873,887 ccmA OKGIIK_08565: ccmB - heme exporter protein CcmB, at 1,874,041 to 1,874,727 ccmB OKGIIK_08570: ccmC - heme ABC transporter permease, at 1,874,734 to 1,875,492 ccmC OKGIIK_08575: ccmD - heme exporter protein CcmD, at 1,875,489 to 1,875,695 ccmD OKGIIK_08580: ccmE - cytochrome c maturation protein CcmE, at 1,875,714 to 1,876,190 ccmE Position (kb) 1874 1875Strain fitness (log2 ratio) -2 -1 0 1at 1873.140 kb on + strand, within OKGIIK_08555at 1873.140 kb on + strand, within OKGIIK_08555at 1873.140 kb on + strand, within OKGIIK_08555at 1873.140 kb on + strand, within OKGIIK_08555at 1873.140 kb on + strand, within OKGIIK_08555at 1873.140 kb on + strand, within OKGIIK_08555at 1873.140 kb on + strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strandat 1874.733 kb on + strandat 1874.733 kb on + strandat 1874.733 kb on + strandat 1874.733 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
remove
1,873,140 + OKGIIK_08555 0.88 +0.4
1,873,140 + OKGIIK_08555 0.88 +0.8
1,873,140 + OKGIIK_08555 0.88 -0.5
1,873,140 + OKGIIK_08555 0.88 -0.5
1,873,140 + OKGIIK_08555 0.88 +0.1
1,873,140 + OKGIIK_08555 0.88 +0.1
1,873,140 + OKGIIK_08555 0.88 +0.4
1,873,141 - OKGIIK_08555 0.88 +1.4
1,873,141 - OKGIIK_08555 0.88 +1.1
1,873,141 - OKGIIK_08555 0.88 -1.0
1,873,141 - OKGIIK_08555 0.88 +0.5
1,873,141 - OKGIIK_08555 0.88 -0.1
1,873,141 - OKGIIK_08555 0.88 -0.8
1,873,141 - OKGIIK_08555 0.88 -0.2
1,873,141 - OKGIIK_08555 0.88 +1.2
1,873,141 - OKGIIK_08555 0.88 +0.1
1,873,141 - OKGIIK_08555 0.88 -0.5
1,873,141 - OKGIIK_08555 0.88 -0.2
1,873,885 + +1.1
1,873,885 + -1.4
1,873,885 + +0.4
1,873,885 + -0.6
1,873,885 + +0.2
1,873,885 + -0.8
1,873,885 + -2.6
1,873,885 + +0.2
1,873,885 + -0.4
1,874,733 + -1.7
1,874,733 + +0.0
1,874,733 + +0.4
1,874,733 + +0.1

Or see this region's nucleotide sequence