Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_08555 and ccmA are separated by 61 nucleotides ccmA and ccmB are separated by 153 nucleotides ccmB and ccmC are separated by 6 nucleotides ccmC and ccmD overlap by 4 nucleotides ccmD and ccmE are separated by 18 nucleotides
OKGIIK_08555: OKGIIK_08555 - DUF3293 domain-containing protein, at 1,872,783 to 1,873,190
_08555
OKGIIK_08560: ccmA - cytochrome c biogenesis heme-transporting ATPase CcmA, at 1,873,252 to 1,873,887
ccmA
OKGIIK_08565: ccmB - heme exporter protein CcmB, at 1,874,041 to 1,874,727
ccmB
OKGIIK_08570: ccmC - heme ABC transporter permease, at 1,874,734 to 1,875,492
ccmC
OKGIIK_08575: ccmD - heme exporter protein CcmD, at 1,875,489 to 1,875,695
ccmD
OKGIIK_08580: ccmE - cytochrome c maturation protein CcmE, at 1,875,714 to 1,876,190
ccmE
Position (kb)
1874
1875 Strain fitness (log2 ratio)
-2
-1
0
1 at 1873.140 kb on + strand, within OKGIIK_08555 at 1873.140 kb on + strand, within OKGIIK_08555 at 1873.140 kb on + strand, within OKGIIK_08555 at 1873.140 kb on + strand, within OKGIIK_08555 at 1873.140 kb on + strand, within OKGIIK_08555 at 1873.140 kb on + strand, within OKGIIK_08555 at 1873.140 kb on + strand, within OKGIIK_08555 at 1873.141 kb on - strand, within OKGIIK_08555 at 1873.141 kb on - strand, within OKGIIK_08555 at 1873.141 kb on - strand, within OKGIIK_08555 at 1873.141 kb on - strand, within OKGIIK_08555 at 1873.141 kb on - strand, within OKGIIK_08555 at 1873.141 kb on - strand, within OKGIIK_08555 at 1873.141 kb on - strand, within OKGIIK_08555 at 1873.141 kb on - strand, within OKGIIK_08555 at 1873.141 kb on - strand, within OKGIIK_08555 at 1873.141 kb on - strand, within OKGIIK_08555 at 1873.141 kb on - strand, within OKGIIK_08555 at 1873.885 kb on + strand at 1873.885 kb on + strand at 1873.885 kb on + strand at 1873.885 kb on + strand at 1873.885 kb on + strand at 1873.885 kb on + strand at 1873.885 kb on + strand at 1873.885 kb on + strand at 1873.885 kb on + strand at 1874.733 kb on + strand at 1874.733 kb on + strand at 1874.733 kb on + strand at 1874.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 1,873,140 + OKGIIK_08555 0.88 +0.4 1,873,140 + OKGIIK_08555 0.88 +0.8 1,873,140 + OKGIIK_08555 0.88 -0.5 1,873,140 + OKGIIK_08555 0.88 -0.5 1,873,140 + OKGIIK_08555 0.88 +0.1 1,873,140 + OKGIIK_08555 0.88 +0.1 1,873,140 + OKGIIK_08555 0.88 +0.4 1,873,141 - OKGIIK_08555 0.88 +1.4 1,873,141 - OKGIIK_08555 0.88 +1.1 1,873,141 - OKGIIK_08555 0.88 -1.0 1,873,141 - OKGIIK_08555 0.88 +0.5 1,873,141 - OKGIIK_08555 0.88 -0.1 1,873,141 - OKGIIK_08555 0.88 -0.8 1,873,141 - OKGIIK_08555 0.88 -0.2 1,873,141 - OKGIIK_08555 0.88 +1.2 1,873,141 - OKGIIK_08555 0.88 +0.1 1,873,141 - OKGIIK_08555 0.88 -0.5 1,873,141 - OKGIIK_08555 0.88 -0.2 1,873,885 + +1.1 1,873,885 + -1.4 1,873,885 + +0.4 1,873,885 + -0.6 1,873,885 + +0.2 1,873,885 + -0.8 1,873,885 + -2.6 1,873,885 + +0.2 1,873,885 + -0.4 1,874,733 + -1.7 1,874,733 + +0.0 1,874,733 + +0.4 1,874,733 + +0.1
Or see this region's nucleotide sequence