Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08180

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
1,797,607	+				-0.3
1,797,607	+				+1.0
1,797,655	+				-0.9
1,797,655	+				+1.2
1,797,655	+				-1.5
1,797,655	+				+0.4
1,797,655	+				-1.6
1,797,655	+				-1.9
1,797,655	+				-0.2
1,797,655	+				-0.2
1,797,655	+				-2.0
1,797,655	+				+1.2
1,797,655	+				+0.5
1,797,655	+				-0.9
1,797,656	-				+0.1
1,797,656	-				+0.4
1,797,656	-				+0.4
1,797,656	-				+2.0
1,797,656	-				+0.6
1,797,656	-				-1.3
1,797,656	-				+1.0
1,797,656	-				+0.2
1,797,667	+				+0.1
1,797,667	+				+0.5
1,797,667	+				+3.4
1,797,667	+				-1.4
1,797,667	+				+1.7
1,797,667	+				-0.2
1,797,667	+				+1.4
1,797,668	-				-2.0
1,797,668	-				-0.8
1,797,668	-				-0.7
1,797,668	-				-0.6
1,797,668	-				+0.2
1,797,668	-				+0.1
1,797,911	+	cysK	OKGIIK_08175	0.32	+0.1
1,797,911	+	cysK	OKGIIK_08175	0.32	-0.4
1,797,911	+	cysK	OKGIIK_08175	0.32	-0.4
1,797,911	+	cysK	OKGIIK_08175	0.32	-0.5
1,797,911	+	cysK	OKGIIK_08175	0.32	+0.1
1,797,912	-	cysK	OKGIIK_08175	0.32	+1.2
1,797,912	-	cysK	OKGIIK_08175	0.32	-0.4
1,798,035	+	cysK	OKGIIK_08175	0.45	+0.3
1,798,035	+	cysK	OKGIIK_08175	0.45	+0.1
1,798,156	+	cysK	OKGIIK_08175	0.58	+0.1
1,798,156	+	cysK	OKGIIK_08175	0.58	-0.2
1,798,156	+	cysK	OKGIIK_08175	0.58	+1.4
1,798,156	+	cysK	OKGIIK_08175	0.58	+1.4
1,798,157	-	cysK	OKGIIK_08175	0.58	+1.2
1,798,157	-	cysK	OKGIIK_08175	0.58	-0.2
1,798,240	+	cysK	OKGIIK_08175	0.67	-1.7
1,798,343	+	cysK	OKGIIK_08175	0.77	+0.1
1,798,343	+	cysK	OKGIIK_08175	0.77	-0.7
1,798,417	+	cysK	OKGIIK_08175	0.85	-0.4
1,798,417	+	cysK	OKGIIK_08175	0.85	-0.6
1,798,417	+	cysK	OKGIIK_08175	0.85	-0.1
1,798,417	+	cysK	OKGIIK_08175	0.85	+0.1
1,798,417	+	cysK	OKGIIK_08175	0.85	+0.9
1,798,417	+	cysK	OKGIIK_08175	0.85	-0.6
1,798,417	+	cysK	OKGIIK_08175	0.85	+1.4
1,798,417	+	cysK	OKGIIK_08175	0.85	+1.0
1,798,417	+	cysK	OKGIIK_08175	0.85	+0.2
1,798,417	+	cysK	OKGIIK_08175	0.85	+0.7
1,798,417	+	cysK	OKGIIK_08175	0.85	+1.1
1,798,417	+	cysK	OKGIIK_08175	0.85	+0.3
1,798,417	+	cysK	OKGIIK_08175	0.85	+0.4
1,798,417	+	cysK	OKGIIK_08175	0.85	-0.3
1,798,417	+	cysK	OKGIIK_08175	0.85	+0.1
1,798,418	-	cysK	OKGIIK_08175	0.85	+0.2
1,798,418	-	cysK	OKGIIK_08175	0.85	+0.1
1,798,418	-	cysK	OKGIIK_08175	0.85	+1.1
1,798,418	-	cysK	OKGIIK_08175	0.85	-0.4
1,798,418	-	cysK	OKGIIK_08175	0.85	+0.1
1,798,418	-	cysK	OKGIIK_08175	0.85	+1.4
1,798,418	-	cysK	OKGIIK_08175	0.85	-1.5
1,798,418	-	cysK	OKGIIK_08175	0.85	-0.4
1,798,418	-	cysK	OKGIIK_08175	0.85	-1.1
1,798,418	-	cysK	OKGIIK_08175	0.85	+2.0
1,798,418	-	cysK	OKGIIK_08175	0.85	+0.7
1,798,418	-	cysK	OKGIIK_08175	0.85	+0.8
1,798,418	-	cysK	OKGIIK_08175	0.85	-0.3
1,798,474	+				+0.6
1,798,474	+				+0.4
1,798,502	+				-1.2
1,798,503	-				+1.4
1,798,622	+	yurZ	OKGIIK_08180	0.18	+1.1
1,798,622	+	yurZ	OKGIIK_08180	0.18	+1.5
1,798,622	+	yurZ	OKGIIK_08180	0.18	-0.9
1,798,623	-	yurZ	OKGIIK_08180	0.19	+0.7
1,798,623	-	yurZ	OKGIIK_08180	0.19	+1.4
1,798,623	-	yurZ	OKGIIK_08180	0.19	-0.2
1,798,623	-	yurZ	OKGIIK_08180	0.19	-0.8
1,798,728	-	yurZ	OKGIIK_08180	0.48	-0.9
1,798,728	-	yurZ	OKGIIK_08180	0.48	+0.1
1,798,728	-	yurZ	OKGIIK_08180	0.48	+1.6
1,798,892	+				+1.5
1,798,892	+				+0.9
1,798,892	+				+1.1
1,798,893	-				-0.9
1,798,893	-				+0.2
1,798,893	-				-0.4
1,799,160	+				-0.9
1,799,160	+				-0.9
1,799,160	+				-3.3
1,799,258	-				+0.1
1,799,258	-				-0.8
1,799,389	+	lipA	OKGIIK_08190	0.17	+0.1
1,799,389	+	lipA	OKGIIK_08190	0.17	-0.4
1,799,389	+	lipA	OKGIIK_08190	0.17	-1.3
1,799,389	+	lipA	OKGIIK_08190	0.17	-1.6
1,799,389	+	lipA	OKGIIK_08190	0.17	-0.2
1,799,389	+	lipA	OKGIIK_08190	0.17	+0.1
1,799,389	+	lipA	OKGIIK_08190	0.17	+0.8
1,799,389	+	lipA	OKGIIK_08190	0.17	+0.4
1,799,389	+	lipA	OKGIIK_08190	0.17	-0.1
1,799,389	+	lipA	OKGIIK_08190	0.17	+0.6
1,799,389	+	lipA	OKGIIK_08190	0.17	-0.1
1,799,389	+	lipA	OKGIIK_08190	0.17	-1.2
1,799,390	-	lipA	OKGIIK_08190	0.18	+0.0
1,799,390	-	lipA	OKGIIK_08190	0.18	+0.0
1,799,390	-	lipA	OKGIIK_08190	0.18	-1.6
1,799,390	-	lipA	OKGIIK_08190	0.18	+0.3
1,799,390	-	lipA	OKGIIK_08190	0.18	+1.6
1,799,390	-	lipA	OKGIIK_08190	0.18	+2.4
1,799,390	-	lipA	OKGIIK_08190	0.18	-1.5
1,799,390	-	lipA	OKGIIK_08190	0.18	-0.1
1,799,390	-	lipA	OKGIIK_08190	0.18	-2.6
1,799,390	-	lipA	OKGIIK_08190	0.18	-0.8
1,799,390	-	lipA	OKGIIK_08190	0.18	+0.5
1,799,390	-	lipA	OKGIIK_08190	0.18	+0.1
1,799,390	-	lipA	OKGIIK_08190	0.18	+1.1
1,799,390	-	lipA	OKGIIK_08190	0.18	+0.3
1,799,390	-	lipA	OKGIIK_08190	0.18	-0.6
1,799,390	-	lipA	OKGIIK_08190	0.18	+1.4
1,799,390	-	lipA	OKGIIK_08190	0.18	+0.3
1,799,441	+	lipA	OKGIIK_08190	0.23	-1.3
1,799,441	+	lipA	OKGIIK_08190	0.23	-2.2
1,799,442	-	lipA	OKGIIK_08190	0.23	+0.0
1,799,442	-	lipA	OKGIIK_08190	0.23	+1.4
1,799,442	-	lipA	OKGIIK_08190	0.23	-1.2
1,799,551	+	lipA	OKGIIK_08190	0.34	-0.6
1,799,614	+	lipA	OKGIIK_08190	0.40	+0.2
1,799,614	+	lipA	OKGIIK_08190	0.40	-0.2
1,799,614	+	lipA	OKGIIK_08190	0.40	-0.2
1,799,614	+	lipA	OKGIIK_08190	0.40	-2.2
1,799,615	-	lipA	OKGIIK_08190	0.40	-1.8
1,799,615	-	lipA	OKGIIK_08190	0.40	+1.4
1,799,615	-	lipA	OKGIIK_08190	0.40	+0.2
1,799,615	-	lipA	OKGIIK_08190	0.40	-0.7
1,799,615	-	lipA	OKGIIK_08190	0.40	-0.9
1,799,615	-	lipA	OKGIIK_08190	0.40	+0.3
1,799,615	-	lipA	OKGIIK_08190	0.40	+0.5
1,799,615	-	lipA	OKGIIK_08190	0.40	+0.1
1,799,615	-	lipA	OKGIIK_08190	0.40	-0.6
1,799,737	+	lipA	OKGIIK_08190	0.52	-1.1
1,799,737	+	lipA	OKGIIK_08190	0.52	-1.1
1,799,737	+	lipA	OKGIIK_08190	0.52	-0.6
1,799,737	+	lipA	OKGIIK_08190	0.52	+0.4
1,799,738	-	lipA	OKGIIK_08190	0.52	+0.2
1,799,794	+	lipA	OKGIIK_08190	0.58	+0.2
1,799,794	+	lipA	OKGIIK_08190	0.58	-0.4
1,799,794	+	lipA	OKGIIK_08190	0.58	-2.5
1,799,794	+	lipA	OKGIIK_08190	0.58	-0.2
1,799,795	-	lipA	OKGIIK_08190	0.58	-0.1