Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccoN and ccoO are separated by 127 nucleotides ccoO and OKGIIK_07665 overlap by 4 nucleotides OKGIIK_07665 and ccoP overlap by 4 nucleotides ccoP and OKGIIK_07675 overlap by 17 nucleotides OKGIIK_07675 and OKGIIK_07680 overlap by 4 nucleotides
OKGIIK_07655: ccoN - cytochrome-c oxidase, cbb3-type subunit I, at 1,693,313 to 1,694,779
ccoN
OKGIIK_07660: ccoO - cytochrome-c oxidase, cbb3-type subunit II, at 1,694,907 to 1,695,557
ccoO
OKGIIK_07665: OKGIIK_07665 - Cytochrome-c oxidase, at 1,695,554 to 1,695,727
_07665
OKGIIK_07670: ccoP - cytochrome-c oxidase, cbb3-type subunit III, at 1,695,724 to 1,696,635
ccoP
OKGIIK_07675: OKGIIK_07675 - hypothetical protein, at 1,696,619 to 1,696,855
_07675
OKGIIK_07680: OKGIIK_07680 - ATPase P, at 1,696,852 to 1,699,110
_07680
Position (kb) 1695
1696
1697 Strain fitness (log2 ratio) -1
0
1 at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1695.057 kb on + strand, within ccoO at 1695.058 kb on - strand, within ccoO at 1695.192 kb on + strand, within ccoO at 1695.193 kb on - strand, within ccoO at 1695.644 kb on + strand, within OKGIIK_07665 at 1695.793 kb on + strand at 1696.072 kb on + strand, within ccoP at 1696.073 kb on - strand, within ccoP at 1696.328 kb on - strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.470 kb on - strand, within ccoP at 1696.588 kb on + strand at 1696.589 kb on - strand at 1696.594 kb on + strand at 1696.780 kb on + strand, within OKGIIK_07675 at 1696.780 kb on + strand, within OKGIIK_07675 at 1697.228 kb on - strand, within OKGIIK_07680 at 1697.242 kb on + strand, within OKGIIK_07680
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 1,694,894 + +0.6 1,694,894 + -0.0 1,694,894 + -1.3 1,694,894 + -0.2 1,694,894 + +0.1 1,695,057 + ccoO OKGIIK_07660 0.23 +1.4 1,695,058 - ccoO OKGIIK_07660 0.23 +1.7 1,695,192 + ccoO OKGIIK_07660 0.44 +0.2 1,695,193 - ccoO OKGIIK_07660 0.44 +0.4 1,695,644 + OKGIIK_07665 0.52 -1.5 1,695,793 + +0.4 1,696,072 + ccoP OKGIIK_07670 0.38 +0.1 1,696,073 - ccoP OKGIIK_07670 0.38 +0.2 1,696,328 - ccoP OKGIIK_07670 0.66 -0.4 1,696,469 + ccoP OKGIIK_07670 0.82 -0.8 1,696,469 + ccoP OKGIIK_07670 0.82 -1.2 1,696,469 + ccoP OKGIIK_07670 0.82 +0.1 1,696,469 + ccoP OKGIIK_07670 0.82 +1.6 1,696,469 + ccoP OKGIIK_07670 0.82 +0.4 1,696,470 - ccoP OKGIIK_07670 0.82 -0.6 1,696,588 + +0.6 1,696,589 - -0.2 1,696,594 + +0.8 1,696,780 + OKGIIK_07675 0.68 +0.4 1,696,780 + OKGIIK_07675 0.68 +1.4 1,697,228 - OKGIIK_07680 0.17 -1.2 1,697,242 + OKGIIK_07680 0.17 -0.9
Or see this region's nucleotide sequence