Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ispG and ccoN are separated by 320 nucleotides ccoN and ccoO are separated by 127 nucleotides ccoO and OKGIIK_07665 overlap by 4 nucleotides OKGIIK_07665 and ccoP overlap by 4 nucleotides
OKGIIK_07650: ispG - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 1,691,733 to 1,692,992
ispG
OKGIIK_07655: ccoN - cytochrome-c oxidase, cbb3-type subunit I, at 1,693,313 to 1,694,779
ccoN
OKGIIK_07660: ccoO - cytochrome-c oxidase, cbb3-type subunit II, at 1,694,907 to 1,695,557
ccoO
OKGIIK_07665: OKGIIK_07665 - Cytochrome-c oxidase, at 1,695,554 to 1,695,727
_07665
OKGIIK_07670: ccoP - cytochrome-c oxidase, cbb3-type subunit III, at 1,695,724 to 1,696,635
ccoP
Position (kb) 1693
1694
1695 Strain fitness (log2 ratio) -1
0
1
2 at 1693.294 kb on + strand at 1693.294 kb on + strand at 1693.294 kb on + strand at 1693.295 kb on - strand at 1693.541 kb on + strand, within ccoN at 1693.542 kb on - strand, within ccoN at 1693.778 kb on + strand, within ccoN at 1693.779 kb on - strand, within ccoN at 1693.779 kb on - strand, within ccoN at 1693.883 kb on + strand, within ccoN at 1693.884 kb on - strand, within ccoN at 1693.973 kb on + strand, within ccoN at 1693.973 kb on + strand, within ccoN at 1693.976 kb on + strand, within ccoN at 1693.977 kb on - strand, within ccoN at 1694.057 kb on + strand, within ccoN at 1694.087 kb on + strand, within ccoN at 1694.393 kb on + strand, within ccoN at 1694.394 kb on - strand, within ccoN at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1695.057 kb on + strand, within ccoO at 1695.058 kb on - strand, within ccoO at 1695.192 kb on + strand, within ccoO at 1695.193 kb on - strand, within ccoO at 1695.644 kb on + strand, within OKGIIK_07665
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 1,693,294 + +0.6 1,693,294 + +1.2 1,693,294 + -0.1 1,693,295 - +1.8 1,693,541 + ccoN OKGIIK_07655 0.16 +1.0 1,693,542 - ccoN OKGIIK_07655 0.16 +0.1 1,693,778 + ccoN OKGIIK_07655 0.32 +0.1 1,693,779 - ccoN OKGIIK_07655 0.32 +2.4 1,693,779 - ccoN OKGIIK_07655 0.32 +1.6 1,693,883 + ccoN OKGIIK_07655 0.39 -0.4 1,693,884 - ccoN OKGIIK_07655 0.39 -1.1 1,693,973 + ccoN OKGIIK_07655 0.45 +0.1 1,693,973 + ccoN OKGIIK_07655 0.45 -1.4 1,693,976 + ccoN OKGIIK_07655 0.45 -1.5 1,693,977 - ccoN OKGIIK_07655 0.45 +1.4 1,694,057 + ccoN OKGIIK_07655 0.51 +0.5 1,694,087 + ccoN OKGIIK_07655 0.53 +1.1 1,694,393 + ccoN OKGIIK_07655 0.74 +0.4 1,694,394 - ccoN OKGIIK_07655 0.74 +0.4 1,694,894 + +0.6 1,694,894 + -0.0 1,694,894 + -1.3 1,694,894 + -0.2 1,694,894 + +0.1 1,695,057 + ccoO OKGIIK_07660 0.23 +1.4 1,695,058 - ccoO OKGIIK_07660 0.23 +1.7 1,695,192 + ccoO OKGIIK_07660 0.44 +0.2 1,695,193 - ccoO OKGIIK_07660 0.44 +0.4 1,695,644 + OKGIIK_07665 0.52 -1.5
Or see this region's nucleotide sequence