Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dapB and dnaJ are separated by 70 nucleotides dnaJ and dnaK are separated by 109 nucleotides
OKGIIK_07315: dapB - 4-hydroxy-tetrahydrodipicolinate reductase, at 1,619,118 to 1,619,918
dapB
OKGIIK_07320: dnaJ - molecular chaperone DnaJ, at 1,619,989 to 1,621,116
dnaJ
OKGIIK_07325: dnaK - molecular chaperone DnaK, at 1,621,226 to 1,623,142
dnaK
Position (kb)
1619
1620
1621
1622 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1619.043 kb on + strand at 1619.043 kb on + strand at 1619.043 kb on + strand at 1619.044 kb on - strand at 1619.044 kb on - strand at 1619.044 kb on - strand at 1619.070 kb on + strand at 1619.070 kb on + strand at 1619.070 kb on + strand at 1619.070 kb on + strand at 1619.070 kb on + strand at 1619.070 kb on + strand at 1619.070 kb on + strand at 1619.071 kb on - strand at 1619.071 kb on - strand at 1619.071 kb on - strand at 1619.071 kb on - strand at 1619.071 kb on - strand at 1619.071 kb on - strand at 1619.956 kb on + strand at 1619.956 kb on + strand at 1619.956 kb on + strand at 1619.956 kb on + strand at 1619.956 kb on + strand at 1619.956 kb on + strand at 1619.956 kb on + strand at 1619.956 kb on + strand at 1619.956 kb on + strand at 1619.956 kb on + strand at 1619.957 kb on - strand at 1619.957 kb on - strand at 1619.957 kb on - strand at 1619.957 kb on - strand at 1619.957 kb on - strand at 1619.957 kb on - strand at 1620.015 kb on - strand at 1620.253 kb on + strand, within dnaJ at 1620.253 kb on + strand, within dnaJ at 1620.253 kb on + strand, within dnaJ at 1620.254 kb on - strand, within dnaJ at 1620.254 kb on - strand, within dnaJ at 1620.254 kb on - strand, within dnaJ at 1620.254 kb on - strand, within dnaJ at 1620.329 kb on + strand, within dnaJ at 1620.329 kb on + strand, within dnaJ at 1620.329 kb on + strand, within dnaJ at 1620.329 kb on + strand, within dnaJ at 1620.329 kb on + strand, within dnaJ at 1620.329 kb on + strand, within dnaJ at 1620.329 kb on + strand, within dnaJ at 1620.329 kb on + strand, within dnaJ at 1620.329 kb on + strand, within dnaJ at 1620.329 kb on + strand, within dnaJ at 1620.329 kb on + strand, within dnaJ at 1620.329 kb on + strand, within dnaJ at 1620.329 kb on + strand, within dnaJ at 1620.330 kb on - strand, within dnaJ at 1620.330 kb on - strand, within dnaJ at 1620.330 kb on - strand, within dnaJ at 1620.330 kb on - strand, within dnaJ at 1620.330 kb on - strand, within dnaJ at 1620.330 kb on - strand, within dnaJ at 1620.330 kb on - strand, within dnaJ at 1620.330 kb on - strand, within dnaJ at 1620.330 kb on - strand, within dnaJ at 1620.330 kb on - strand, within dnaJ at 1620.330 kb on - strand, within dnaJ at 1620.330 kb on - strand, within dnaJ at 1620.386 kb on + strand, within dnaJ at 1620.386 kb on + strand, within dnaJ at 1620.386 kb on + strand, within dnaJ at 1620.386 kb on + strand, within dnaJ at 1620.386 kb on + strand, within dnaJ at 1620.386 kb on + strand, within dnaJ at 1620.386 kb on + strand, within dnaJ at 1620.386 kb on + strand, within dnaJ at 1620.386 kb on + strand, within dnaJ at 1620.386 kb on + strand, within dnaJ at 1620.386 kb on + strand, within dnaJ at 1620.386 kb on + strand, within dnaJ at 1620.386 kb on + strand, within dnaJ at 1620.387 kb on - strand, within dnaJ at 1620.387 kb on - strand, within dnaJ at 1620.387 kb on - strand, within dnaJ at 1620.387 kb on - strand, within dnaJ at 1620.387 kb on - strand, within dnaJ at 1620.387 kb on - strand, within dnaJ at 1620.387 kb on - strand, within dnaJ at 1620.387 kb on - strand, within dnaJ at 1620.387 kb on - strand, within dnaJ at 1620.387 kb on - strand, within dnaJ at 1620.387 kb on - strand, within dnaJ at 1620.387 kb on - strand, within dnaJ at 1620.387 kb on - strand, within dnaJ at 1620.478 kb on + strand, within dnaJ at 1620.478 kb on + strand, within dnaJ at 1620.478 kb on + strand, within dnaJ at 1620.479 kb on - strand, within dnaJ at 1620.479 kb on - strand, within dnaJ at 1620.479 kb on - strand, within dnaJ at 1620.730 kb on + strand, within dnaJ at 1620.730 kb on + strand, within dnaJ at 1620.731 kb on - strand, within dnaJ at 1620.731 kb on - strand, within dnaJ at 1620.731 kb on - strand, within dnaJ at 1620.731 kb on - strand, within dnaJ at 1620.761 kb on + strand, within dnaJ at 1620.761 kb on + strand, within dnaJ at 1620.761 kb on + strand, within dnaJ at 1620.761 kb on + strand, within dnaJ at 1620.761 kb on + strand, within dnaJ at 1620.761 kb on + strand, within dnaJ at 1620.761 kb on + strand, within dnaJ at 1620.761 kb on + strand, within dnaJ at 1620.762 kb on - strand, within dnaJ at 1620.762 kb on - strand, within dnaJ at 1620.762 kb on - strand, within dnaJ at 1620.762 kb on - strand, within dnaJ at 1620.762 kb on - strand, within dnaJ at 1620.762 kb on - strand, within dnaJ at 1620.762 kb on - strand, within dnaJ at 1620.762 kb on - strand, within dnaJ at 1620.762 kb on - strand, within dnaJ at 1620.762 kb on - strand, within dnaJ at 1620.832 kb on - strand, within dnaJ at 1620.920 kb on + strand, within dnaJ at 1620.920 kb on + strand, within dnaJ at 1620.920 kb on + strand, within dnaJ at 1620.920 kb on + strand, within dnaJ at 1620.920 kb on + strand, within dnaJ at 1620.920 kb on + strand, within dnaJ at 1620.920 kb on + strand, within dnaJ at 1620.920 kb on + strand, within dnaJ at 1620.920 kb on + strand, within dnaJ at 1620.920 kb on + strand, within dnaJ at 1620.920 kb on + strand, within dnaJ at 1620.921 kb on - strand, within dnaJ at 1620.921 kb on - strand, within dnaJ at 1620.921 kb on - strand, within dnaJ at 1620.921 kb on - strand, within dnaJ at 1620.921 kb on - strand, within dnaJ at 1620.956 kb on + strand, within dnaJ at 1620.956 kb on + strand, within dnaJ at 1620.956 kb on + strand, within dnaJ at 1620.956 kb on + strand, within dnaJ at 1620.956 kb on + strand, within dnaJ at 1620.957 kb on - strand, within dnaJ at 1620.957 kb on - strand, within dnaJ at 1621.022 kb on + strand at 1621.022 kb on + strand at 1621.022 kb on + strand at 1621.022 kb on + strand at 1621.022 kb on + strand at 1621.022 kb on + strand at 1621.022 kb on + strand at 1621.022 kb on + strand at 1621.022 kb on + strand at 1621.022 kb on + strand at 1621.022 kb on + strand at 1621.023 kb on - strand at 1621.023 kb on - strand at 1621.023 kb on - strand at 1621.023 kb on - strand at 1621.023 kb on - strand at 1621.023 kb on - strand at 1621.023 kb on - strand at 1621.023 kb on - strand at 1621.023 kb on - strand at 1621.023 kb on - strand at 1621.023 kb on - strand at 1621.023 kb on - strand at 1621.023 kb on - strand at 1621.097 kb on + strand at 1621.097 kb on + strand at 1621.097 kb on + strand at 1621.097 kb on + strand at 1621.097 kb on + strand at 1621.098 kb on - strand at 1621.098 kb on - strand at 1621.098 kb on - strand at 1621.098 kb on - strand at 1621.098 kb on - strand at 1621.100 kb on + strand at 1621.100 kb on + strand at 1621.100 kb on + strand at 1621.101 kb on - strand at 1621.101 kb on - strand at 1621.101 kb on - strand at 1621.208 kb on + strand at 1621.227 kb on + strand at 1621.227 kb on + strand at 1621.228 kb on - strand at 1621.228 kb on - strand at 1621.228 kb on - strand at 1621.228 kb on - strand at 1621.228 kb on - strand at 1621.344 kb on + strand at 1621.344 kb on + strand at 1621.345 kb on - strand at 1621.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 1,619,043 + -0.8 1,619,043 + -0.4 1,619,043 + -2.2 1,619,044 - -1.4 1,619,044 - +2.0 1,619,044 - -2.1 1,619,070 + +0.8 1,619,070 + -0.6 1,619,070 + -0.4 1,619,070 + -0.7 1,619,070 + -1.5 1,619,070 + -1.5 1,619,070 + -1.6 1,619,071 - -1.7 1,619,071 - -0.9 1,619,071 - -0.6 1,619,071 - -1.4 1,619,071 - +0.1 1,619,071 - -0.9 1,619,956 + -1.9 1,619,956 + -1.4 1,619,956 + +0.6 1,619,956 + -1.2 1,619,956 + -0.8 1,619,956 + +0.1 1,619,956 + -1.1 1,619,956 + -1.4 1,619,956 + -0.9 1,619,956 + +1.2 1,619,957 - -1.4 1,619,957 - -0.9 1,619,957 - +0.3 1,619,957 - -0.7 1,619,957 - -1.6 1,619,957 - -0.4 1,620,015 - -1.4 1,620,253 + dnaJ OKGIIK_07320 0.23 +1.2 1,620,253 + dnaJ OKGIIK_07320 0.23 -1.6 1,620,253 + dnaJ OKGIIK_07320 0.23 -0.4 1,620,254 - dnaJ OKGIIK_07320 0.23 -0.4 1,620,254 - dnaJ OKGIIK_07320 0.23 -1.2 1,620,254 - dnaJ OKGIIK_07320 0.23 -0.4 1,620,254 - dnaJ OKGIIK_07320 0.23 +0.3 1,620,329 + dnaJ OKGIIK_07320 0.30 -3.1 1,620,329 + dnaJ OKGIIK_07320 0.30 -1.5 1,620,329 + dnaJ OKGIIK_07320 0.30 -0.9 1,620,329 + dnaJ OKGIIK_07320 0.30 -1.4 1,620,329 + dnaJ OKGIIK_07320 0.30 -1.7 1,620,329 + dnaJ OKGIIK_07320 0.30 +0.4 1,620,329 + dnaJ OKGIIK_07320 0.30 -1.2 1,620,329 + dnaJ OKGIIK_07320 0.30 -0.9 1,620,329 + dnaJ OKGIIK_07320 0.30 -0.2 1,620,329 + dnaJ OKGIIK_07320 0.30 +0.6 1,620,329 + dnaJ OKGIIK_07320 0.30 -0.4 1,620,329 + dnaJ OKGIIK_07320 0.30 -0.7 1,620,329 + dnaJ OKGIIK_07320 0.30 -0.4 1,620,330 - dnaJ OKGIIK_07320 0.30 -1.7 1,620,330 - dnaJ OKGIIK_07320 0.30 -1.2 1,620,330 - dnaJ OKGIIK_07320 0.30 -0.4 1,620,330 - dnaJ OKGIIK_07320 0.30 +0.4 1,620,330 - dnaJ OKGIIK_07320 0.30 -0.7 1,620,330 - dnaJ OKGIIK_07320 0.30 -0.9 1,620,330 - dnaJ OKGIIK_07320 0.30 -1.8 1,620,330 - dnaJ OKGIIK_07320 0.30 -0.7 1,620,330 - dnaJ OKGIIK_07320 0.30 -1.2 1,620,330 - dnaJ OKGIIK_07320 0.30 -1.2 1,620,330 - dnaJ OKGIIK_07320 0.30 +0.6 1,620,330 - dnaJ OKGIIK_07320 0.30 -0.9 1,620,386 + dnaJ OKGIIK_07320 0.35 -0.9 1,620,386 + dnaJ OKGIIK_07320 0.35 -1.5 1,620,386 + dnaJ OKGIIK_07320 0.35 +0.6 1,620,386 + dnaJ OKGIIK_07320 0.35 -2.1 1,620,386 + dnaJ OKGIIK_07320 0.35 -0.7 1,620,386 + dnaJ OKGIIK_07320 0.35 -2.7 1,620,386 + dnaJ OKGIIK_07320 0.35 +1.9 1,620,386 + dnaJ OKGIIK_07320 0.35 -0.7 1,620,386 + dnaJ OKGIIK_07320 0.35 -2.3 1,620,386 + dnaJ OKGIIK_07320 0.35 -1.4 1,620,386 + dnaJ OKGIIK_07320 0.35 -2.7 1,620,386 + dnaJ OKGIIK_07320 0.35 -0.7 1,620,386 + dnaJ OKGIIK_07320 0.35 +0.3 1,620,387 - dnaJ OKGIIK_07320 0.35 -0.4 1,620,387 - dnaJ OKGIIK_07320 0.35 -0.8 1,620,387 - dnaJ OKGIIK_07320 0.35 +0.6 1,620,387 - dnaJ OKGIIK_07320 0.35 -1.7 1,620,387 - dnaJ OKGIIK_07320 0.35 -1.4 1,620,387 - dnaJ OKGIIK_07320 0.35 -0.7 1,620,387 - dnaJ OKGIIK_07320 0.35 -0.2 1,620,387 - dnaJ OKGIIK_07320 0.35 -0.4 1,620,387 - dnaJ OKGIIK_07320 0.35 -2.6 1,620,387 - dnaJ OKGIIK_07320 0.35 -1.3 1,620,387 - dnaJ OKGIIK_07320 0.35 -0.4 1,620,387 - dnaJ OKGIIK_07320 0.35 -2.1 1,620,387 - dnaJ OKGIIK_07320 0.35 -0.7 1,620,478 + dnaJ OKGIIK_07320 0.43 -1.5 1,620,478 + dnaJ OKGIIK_07320 0.43 -0.4 1,620,478 + dnaJ OKGIIK_07320 0.43 +0.1 1,620,479 - dnaJ OKGIIK_07320 0.43 -0.9 1,620,479 - dnaJ OKGIIK_07320 0.43 -0.9 1,620,479 - dnaJ OKGIIK_07320 0.43 -1.3 1,620,730 + dnaJ OKGIIK_07320 0.66 -2.8 1,620,730 + dnaJ OKGIIK_07320 0.66 -1.4 1,620,731 - dnaJ OKGIIK_07320 0.66 -1.2 1,620,731 - dnaJ OKGIIK_07320 0.66 +0.2 1,620,731 - dnaJ OKGIIK_07320 0.66 -0.4 1,620,731 - dnaJ OKGIIK_07320 0.66 -1.7 1,620,761 + dnaJ OKGIIK_07320 0.68 -0.9 1,620,761 + dnaJ OKGIIK_07320 0.68 -0.2 1,620,761 + dnaJ OKGIIK_07320 0.68 -1.5 1,620,761 + dnaJ OKGIIK_07320 0.68 -0.9 1,620,761 + dnaJ OKGIIK_07320 0.68 -0.1 1,620,761 + dnaJ OKGIIK_07320 0.68 +0.1 1,620,761 + dnaJ OKGIIK_07320 0.68 -2.6 1,620,761 + dnaJ OKGIIK_07320 0.68 -1.9 1,620,762 - dnaJ OKGIIK_07320 0.69 -1.1 1,620,762 - dnaJ OKGIIK_07320 0.69 -1.2 1,620,762 - dnaJ OKGIIK_07320 0.69 -1.7 1,620,762 - dnaJ OKGIIK_07320 0.69 -2.4 1,620,762 - dnaJ OKGIIK_07320 0.69 -1.2 1,620,762 - dnaJ OKGIIK_07320 0.69 -1.4 1,620,762 - dnaJ OKGIIK_07320 0.69 +0.1 1,620,762 - dnaJ OKGIIK_07320 0.69 -0.4 1,620,762 - dnaJ OKGIIK_07320 0.69 -1.2 1,620,762 - dnaJ OKGIIK_07320 0.69 +1.2 1,620,832 - dnaJ OKGIIK_07320 0.75 -0.7 1,620,920 + dnaJ OKGIIK_07320 0.83 -1.8 1,620,920 + dnaJ OKGIIK_07320 0.83 -2.2 1,620,920 + dnaJ OKGIIK_07320 0.83 -1.2 1,620,920 + dnaJ OKGIIK_07320 0.83 -0.9 1,620,920 + dnaJ OKGIIK_07320 0.83 -2.3 1,620,920 + dnaJ OKGIIK_07320 0.83 -1.4 1,620,920 + dnaJ OKGIIK_07320 0.83 -0.7 1,620,920 + dnaJ OKGIIK_07320 0.83 -1.9 1,620,920 + dnaJ OKGIIK_07320 0.83 -2.1 1,620,920 + dnaJ OKGIIK_07320 0.83 -1.7 1,620,920 + dnaJ OKGIIK_07320 0.83 -0.4 1,620,921 - dnaJ OKGIIK_07320 0.83 -0.4 1,620,921 - dnaJ OKGIIK_07320 0.83 -2.5 1,620,921 - dnaJ OKGIIK_07320 0.83 -0.4 1,620,921 - dnaJ OKGIIK_07320 0.83 -2.5 1,620,921 - dnaJ OKGIIK_07320 0.83 -0.4 1,620,956 + dnaJ OKGIIK_07320 0.86 -0.4 1,620,956 + dnaJ OKGIIK_07320 0.86 -0.7 1,620,956 + dnaJ OKGIIK_07320 0.86 -1.3 1,620,956 + dnaJ OKGIIK_07320 0.86 +0.6 1,620,956 + dnaJ OKGIIK_07320 0.86 -0.2 1,620,957 - dnaJ OKGIIK_07320 0.86 -2.4 1,620,957 - dnaJ OKGIIK_07320 0.86 -0.4 1,621,022 + -1.2 1,621,022 + -0.9 1,621,022 + +0.2 1,621,022 + -2.7 1,621,022 + +1.2 1,621,022 + -0.4 1,621,022 + -0.7 1,621,022 + -1.4 1,621,022 + -0.4 1,621,022 + -0.2 1,621,022 + -0.4 1,621,023 - -1.5 1,621,023 - -1.9 1,621,023 - -1.5 1,621,023 - -1.5 1,621,023 - +1.3 1,621,023 - -0.2 1,621,023 - -1.9 1,621,023 - -0.4 1,621,023 - -3.6 1,621,023 - -0.8 1,621,023 - -0.4 1,621,023 - -0.7 1,621,023 - -2.8 1,621,097 + +1.3 1,621,097 + -1.9 1,621,097 + -0.9 1,621,097 + +0.9 1,621,097 + -1.7 1,621,098 - -0.7 1,621,098 - -0.7 1,621,098 - -2.8 1,621,098 - -0.2 1,621,098 - -0.9 1,621,100 + -0.7 1,621,100 + -1.4 1,621,100 + -1.4 1,621,101 - +0.6 1,621,101 - -0.9 1,621,101 - +1.4 1,621,208 + -0.7 1,621,227 + +0.6 1,621,227 + -1.5 1,621,228 - -2.3 1,621,228 - +0.3 1,621,228 - +0.1 1,621,228 - -1.2 1,621,228 - -1.8 1,621,344 + +0.3 1,621,344 + -0.9 1,621,345 - -0.4 1,621,345 - -1.5
Or see this region's nucleotide sequence