Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt folD and OKGIIK_07105 are separated by 64 nucleotides OKGIIK_07105 and moeB overlap by 4 nucleotides
OKGIIK_07100: folD - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 1,571,412 to 1,572,281
folD
OKGIIK_07105: OKGIIK_07105 - Ribosomal-protein-serine acetyltransferase, at 1,572,346 to 1,572,915
_07105
OKGIIK_07110: moeB - molybdopterin-synthase adenylyltransferase MoeB, at 1,572,912 to 1,574,081
moeB
Position (kb)
1572
1573 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1571.348 kb on - strand at 1571.348 kb on - strand at 1571.348 kb on - strand at 1571.348 kb on - strand at 1571.348 kb on - strand at 1571.348 kb on - strand at 1571.348 kb on - strand at 1571.348 kb on - strand at 1571.348 kb on - strand at 1571.349 kb on + strand at 1571.349 kb on + strand at 1571.349 kb on + strand at 1571.350 kb on - strand at 1571.350 kb on - strand at 1571.350 kb on - strand at 1571.350 kb on - strand at 1571.350 kb on - strand at 1571.350 kb on - strand at 1571.350 kb on - strand at 1571.350 kb on - strand at 1571.350 kb on - strand at 1572.298 kb on - strand at 1572.502 kb on + strand, within OKGIIK_07105 at 1572.502 kb on + strand, within OKGIIK_07105 at 1572.502 kb on + strand, within OKGIIK_07105 at 1572.502 kb on + strand, within OKGIIK_07105 at 1572.503 kb on - strand, within OKGIIK_07105 at 1572.503 kb on - strand, within OKGIIK_07105 at 1572.886 kb on + strand at 1572.887 kb on - strand at 1572.913 kb on + strand at 1572.913 kb on + strand at 1572.913 kb on + strand at 1572.961 kb on - strand at 1573.273 kb on + strand, within moeB at 1573.273 kb on + strand, within moeB at 1573.273 kb on + strand, within moeB at 1573.273 kb on + strand, within moeB at 1573.273 kb on + strand, within moeB at 1573.273 kb on + strand, within moeB at 1573.273 kb on + strand, within moeB at 1573.274 kb on - strand, within moeB at 1573.274 kb on - strand, within moeB at 1573.274 kb on - strand, within moeB at 1573.274 kb on - strand, within moeB at 1573.274 kb on - strand, within moeB at 1573.274 kb on - strand, within moeB at 1573.274 kb on - strand, within moeB at 1573.274 kb on - strand, within moeB at 1573.318 kb on + strand, within moeB at 1573.319 kb on - strand, within moeB at 1573.580 kb on - strand, within moeB at 1573.580 kb on - strand, within moeB at 1573.580 kb on - strand, within moeB at 1573.580 kb on - strand, within moeB at 1573.580 kb on - strand, within moeB at 1573.580 kb on - strand, within moeB at 1573.580 kb on - strand, within moeB at 1573.580 kb on - strand, within moeB at 1573.690 kb on + strand, within moeB
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 1,571,348 - -1.9 1,571,348 - +1.8 1,571,348 - -0.2 1,571,348 - +0.5 1,571,348 - -0.9 1,571,348 - -0.4 1,571,348 - -0.4 1,571,348 - -0.3 1,571,348 - -0.8 1,571,349 + -1.2 1,571,349 + +0.6 1,571,349 + -0.4 1,571,350 - +0.1 1,571,350 - -1.2 1,571,350 - -1.1 1,571,350 - -0.5 1,571,350 - -0.1 1,571,350 - +1.0 1,571,350 - -1.2 1,571,350 - -1.4 1,571,350 - +0.2 1,572,298 - -0.2 1,572,502 + OKGIIK_07105 0.27 -1.1 1,572,502 + OKGIIK_07105 0.27 +1.9 1,572,502 + OKGIIK_07105 0.27 +1.0 1,572,502 + OKGIIK_07105 0.27 -1.1 1,572,503 - OKGIIK_07105 0.28 -0.2 1,572,503 - OKGIIK_07105 0.28 +1.6 1,572,886 + -0.4 1,572,887 - -0.8 1,572,913 + +0.1 1,572,913 + -0.6 1,572,913 + +0.2 1,572,961 - +0.8 1,573,273 + moeB OKGIIK_07110 0.31 -0.1 1,573,273 + moeB OKGIIK_07110 0.31 +0.4 1,573,273 + moeB OKGIIK_07110 0.31 -1.2 1,573,273 + moeB OKGIIK_07110 0.31 -0.2 1,573,273 + moeB OKGIIK_07110 0.31 -0.2 1,573,273 + moeB OKGIIK_07110 0.31 +0.2 1,573,273 + moeB OKGIIK_07110 0.31 +0.1 1,573,274 - moeB OKGIIK_07110 0.31 -0.6 1,573,274 - moeB OKGIIK_07110 0.31 +0.4 1,573,274 - moeB OKGIIK_07110 0.31 +0.4 1,573,274 - moeB OKGIIK_07110 0.31 -0.8 1,573,274 - moeB OKGIIK_07110 0.31 -0.2 1,573,274 - moeB OKGIIK_07110 0.31 +0.2 1,573,274 - moeB OKGIIK_07110 0.31 +1.1 1,573,274 - moeB OKGIIK_07110 0.31 -0.4 1,573,318 + moeB OKGIIK_07110 0.35 +0.2 1,573,319 - moeB OKGIIK_07110 0.35 +0.8 1,573,580 - moeB OKGIIK_07110 0.57 +0.4 1,573,580 - moeB OKGIIK_07110 0.57 +0.1 1,573,580 - moeB OKGIIK_07110 0.57 -0.4 1,573,580 - moeB OKGIIK_07110 0.57 +0.1 1,573,580 - moeB OKGIIK_07110 0.57 +0.4 1,573,580 - moeB OKGIIK_07110 0.57 +0.1 1,573,580 - moeB OKGIIK_07110 0.57 +1.2 1,573,580 - moeB OKGIIK_07110 0.57 +0.7 1,573,690 + moeB OKGIIK_07110 0.66 +1.4
Or see this region's nucleotide sequence