Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_05985

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
1,314,439	+	cysG	OKGIIK_05980	0.58	+1.2
1,314,439	+	cysG	OKGIIK_05980	0.58	+1.2
1,314,440	-	cysG	OKGIIK_05980	0.58	+0.9
1,314,440	-	cysG	OKGIIK_05980	0.58	-0.2
1,314,552	+	cysG	OKGIIK_05980	0.66	+0.4
1,314,553	-	cysG	OKGIIK_05980	0.66	+0.8
1,314,726	+	cysG	OKGIIK_05980	0.78	-0.2
1,314,726	+	cysG	OKGIIK_05980	0.78	-0.8
1,314,726	+	cysG	OKGIIK_05980	0.78	+1.6
1,314,726	+	cysG	OKGIIK_05980	0.78	+2.7
1,314,726	+	cysG	OKGIIK_05980	0.78	-0.6
1,314,726	+	cysG	OKGIIK_05980	0.78	+0.0
1,314,726	+	cysG	OKGIIK_05980	0.78	-0.2
1,314,727	-	cysG	OKGIIK_05980	0.78	+2.0
1,314,727	-	cysG	OKGIIK_05980	0.78	+0.2
1,314,727	-	cysG	OKGIIK_05980	0.78	-0.1
1,314,727	-	cysG	OKGIIK_05980	0.78	-0.8
1,314,727	-	cysG	OKGIIK_05980	0.78	-1.2
1,314,727	-	cysG	OKGIIK_05980	0.78	+0.4
1,314,727	-	cysG	OKGIIK_05980	0.78	+0.4
1,314,727	-	cysG	OKGIIK_05980	0.78	+0.4
1,314,727	-	cysG	OKGIIK_05980	0.78	+1.9
1,315,056	+				+0.0
1,315,056	+				-0.5
1,315,056	+				-0.5
1,315,057	-				-0.6
1,315,057	-				+0.8
1,315,057	-				+0.0
1,315,158	-				+0.0
1,315,206	+				+1.0
1,315,206	+				-2.1
1,315,206	+				-1.5
1,315,206	+				-1.7
1,315,206	+				+0.3
1,315,206	+				+0.0
1,315,206	+				+1.1
1,315,206	+				-1.1
1,315,206	+				+1.0
1,315,206	+				+1.5
1,315,206	+				+1.9
1,315,206	+				-1.3
1,315,206	+				-1.6
1,315,206	+				-1.1
1,315,206	+				-0.6
1,315,207	-				-0.5
1,315,207	-				-0.8
1,315,207	-				+0.0
1,315,207	-				+1.6
1,315,207	-				-0.1
1,315,207	-				-0.2
1,315,207	-				+1.4
1,315,207	-				+0.1
1,315,440	+	cysK	OKGIIK_05985	0.34	-1.1
1,315,440	+	cysK	OKGIIK_05985	0.34	+1.2
1,315,569	+	cysK	OKGIIK_05985	0.48	+1.0
1,315,569	+	cysK	OKGIIK_05985	0.48	+1.4
1,315,569	+	cysK	OKGIIK_05985	0.48	+1.4
1,315,569	+	cysK	OKGIIK_05985	0.48	+0.0
1,315,569	+	cysK	OKGIIK_05985	0.48	+0.0
1,315,569	+	cysK	OKGIIK_05985	0.48	+2.5
1,315,570	-	cysK	OKGIIK_05985	0.48	-1.3
1,315,570	-	cysK	OKGIIK_05985	0.48	-1.6
1,315,629	+	cysK	OKGIIK_05985	0.54	+0.5
1,315,629	+	cysK	OKGIIK_05985	0.54	+0.2
1,315,629	+	cysK	OKGIIK_05985	0.54	-0.6
1,315,629	+	cysK	OKGIIK_05985	0.54	+0.4
1,315,629	+	cysK	OKGIIK_05985	0.54	+0.6
1,315,629	+	cysK	OKGIIK_05985	0.54	+0.8
1,315,630	-	cysK	OKGIIK_05985	0.54	+1.5
1,315,630	-	cysK	OKGIIK_05985	0.54	+0.4
1,315,630	-	cysK	OKGIIK_05985	0.54	-0.2
1,315,630	-	cysK	OKGIIK_05985	0.54	-0.7
1,315,630	-	cysK	OKGIIK_05985	0.54	-0.7
1,315,630	-	cysK	OKGIIK_05985	0.54	-0.1
1,315,630	-	cysK	OKGIIK_05985	0.54	-0.8
1,315,865	+	cysK	OKGIIK_05985	0.79	+0.0
1,315,866	-	cysK	OKGIIK_05985	0.79	-0.6
1,315,907	+	cysK	OKGIIK_05985	0.84	+0.4
1,315,907	+	cysK	OKGIIK_05985	0.84	+0.4
1,315,907	+	cysK	OKGIIK_05985	0.84	-0.5
1,315,907	+	cysK	OKGIIK_05985	0.84	+2.2
1,315,908	-	cysK	OKGIIK_05985	0.84	+0.4
1,315,908	-	cysK	OKGIIK_05985	0.84	+0.5
1,315,908	-	cysK	OKGIIK_05985	0.84	-1.1
1,315,908	-	cysK	OKGIIK_05985	0.84	+0.7
1,316,007	+				-0.6
1,316,007	+				-1.6
1,316,007	+				-0.8
1,316,007	+				-0.5
1,316,008	-				-0.1
1,316,008	-				-0.2
1,316,008	-				-1.0
1,316,008	-				+1.4
1,316,236	+	hxlR	OKGIIK_05990	0.40	-1.0
1,316,236	+	hxlR	OKGIIK_05990	0.40	+1.5
1,316,237	-	hxlR	OKGIIK_05990	0.40	+1.2
1,316,237	-	hxlR	OKGIIK_05990	0.40	-0.5
1,316,386	+	hxlR	OKGIIK_05990	0.75	-0.2
1,316,386	+	hxlR	OKGIIK_05990	0.75	+0.2
1,316,386	+	hxlR	OKGIIK_05990	0.75	-0.5
1,316,386	+	hxlR	OKGIIK_05990	0.75	-1.1
1,316,386	+	hxlR	OKGIIK_05990	0.75	+0.4
1,316,387	-	hxlR	OKGIIK_05990	0.75	-0.2
1,316,478	+				-0.5
1,316,528	+				-1.8
1,316,528	+				-0.3
1,316,528	+				-0.5
1,316,528	+				+0.2
1,316,528	+				+1.0
1,316,528	+				-1.0
1,316,528	+				-0.2
1,316,528	+				+0.3
1,316,528	+				+1.4
1,316,528	+				+0.8
1,316,528	+				-0.1
1,316,528	+				+0.0
1,316,529	-				+1.4
1,316,529	-				-0.5
1,316,529	-				-1.2
1,316,529	-				-0.9
1,316,529	-				-1.0
1,316,529	-				-0.5
1,316,531	+				+0.9
1,316,531	+				+1.0
1,316,531	+				+0.0
1,316,531	+				-1.4
1,316,531	+				-0.4
1,316,532	-				+1.5
1,316,532	-				+1.0
1,316,532	-				+2.4
1,316,532	-				+1.2
1,316,532	-				-0.2
1,316,532	-				-0.6
1,316,555	+				+0.5
1,316,555	+				-1.1
1,316,555	+				+0.0
1,316,555	+				-0.2
1,316,556	-				-0.8
1,316,556	-				-1.0
1,316,556	-				+1.0
1,316,556	-				-1.9
1,316,556	-				+0.1
1,316,556	-				+0.6
1,316,556	-				-0.5
1,316,586	-				-1.9
1,316,586	-				+1.4
1,316,586	-				-1.4
1,316,586	-				-0.8
1,316,586	-				-1.6
1,316,687	+				-1.3
1,316,687	+				-0.2
1,316,687	+				-0.9
1,316,687	+				+0.3
1,316,687	+				-0.7
1,316,687	+				-0.2
1,316,687	+				+0.0
1,316,687	+				+1.0
1,316,688	-				-0.1
1,316,688	-				+1.4
1,316,688	-				+0.0
1,316,688	-				-0.2
1,316,688	-				+0.5
1,316,690	+				+0.8
1,316,690	+				+0.8
1,316,691	-				+0.2
1,316,828	+	gstA	OKGIIK_05995	0.24	+0.4
1,316,828	+	gstA	OKGIIK_05995	0.24	-0.2
1,316,828	+	gstA	OKGIIK_05995	0.24	+0.5
1,316,828	+	gstA	OKGIIK_05995	0.24	+0.4
1,316,829	-	gstA	OKGIIK_05995	0.24	-2.1
1,316,829	-	gstA	OKGIIK_05995	0.24	-2.0
1,316,829	-	gstA	OKGIIK_05995	0.24	+0.6
1,316,829	-	gstA	OKGIIK_05995	0.24	-1.3
1,316,829	-	gstA	OKGIIK_05995	0.24	+0.3
1,316,829	-	gstA	OKGIIK_05995	0.24	+1.0
1,316,829	-	gstA	OKGIIK_05995	0.24	-0.9
1,316,891	+	gstA	OKGIIK_05995	0.34	-0.6
1,316,891	+	gstA	OKGIIK_05995	0.34	-1.2
1,316,891	+	gstA	OKGIIK_05995	0.34	+1.0
1,316,892	-	gstA	OKGIIK_05995	0.35	+1.5
1,316,892	-	gstA	OKGIIK_05995	0.35	-1.7
1,316,892	-	gstA	OKGIIK_05995	0.35	+0.0
1,316,892	-	gstA	OKGIIK_05995	0.35	-0.2
1,316,892	-	gstA	OKGIIK_05995	0.35	+0.0
1,316,892	-	gstA	OKGIIK_05995	0.35	+0.0
1,316,976	-	gstA	OKGIIK_05995	0.48	+2.1
1,316,976	-	gstA	OKGIIK_05995	0.48	-0.5
1,316,976	-	gstA	OKGIIK_05995	0.48	+0.0
1,316,976	-	gstA	OKGIIK_05995	0.48	+0.0
1,316,976	-	gstA	OKGIIK_05995	0.48	+0.3
1,316,976	-	gstA	OKGIIK_05995	0.48	+0.6
1,316,976	-	gstA	OKGIIK_05995	0.48	+0.4
1,316,976	-	gstA	OKGIIK_05995	0.48	-2.0
1,317,002	+	gstA	OKGIIK_05995	0.52	-0.3
1,317,002	+	gstA	OKGIIK_05995	0.52	+1.6
1,317,002	+	gstA	OKGIIK_05995	0.52	+0.4
1,317,002	+	gstA	OKGIIK_05995	0.52	+1.5
1,317,002	+	gstA	OKGIIK_05995	0.52	+1.1
1,317,002	+	gstA	OKGIIK_05995	0.52	-1.0
1,317,002	+	gstA	OKGIIK_05995	0.52	-2.5
1,317,002	+	gstA	OKGIIK_05995	0.52	-0.6
1,317,002	+	gstA	OKGIIK_05995	0.52	+0.4
1,317,003	-	gstA	OKGIIK_05995	0.53	-0.6
1,317,003	-	gstA	OKGIIK_05995	0.53	-0.8
1,317,003	-	gstA	OKGIIK_05995	0.53	+1.8
1,317,003	-	gstA	OKGIIK_05995	0.53	+0.0
1,317,003	-	gstA	OKGIIK_05995	0.53	-0.5
1,317,003	-	gstA	OKGIIK_05995	0.53	+0.8
1,317,003	-	gstA	OKGIIK_05995	0.53	-1.6
1,317,059	+	gstA	OKGIIK_05995	0.62	+0.3
1,317,059	+	gstA	OKGIIK_05995	0.62	-1.1
1,317,059	+	gstA	OKGIIK_05995	0.62	+0.4
1,317,059	+	gstA	OKGIIK_05995	0.62	+0.5
1,317,059	+	gstA	OKGIIK_05995	0.62	+1.7
1,317,059	+	gstA	OKGIIK_05995	0.62	-0.5
1,317,059	+	gstA	OKGIIK_05995	0.62	-1.5
1,317,059	+	gstA	OKGIIK_05995	0.62	-0.0
1,317,059	+	gstA	OKGIIK_05995	0.62	+0.0
1,317,059	+	gstA	OKGIIK_05995	0.62	+0.2
1,317,060	-	gstA	OKGIIK_05995	0.62	-0.0
1,317,060	-	gstA	OKGIIK_05995	0.62	-1.6
1,317,060	-	gstA	OKGIIK_05995	0.62	-0.4
1,317,060	-	gstA	OKGIIK_05995	0.62	+1.6
1,317,060	-	gstA	OKGIIK_05995	0.62	-0.6
1,317,060	-	gstA	OKGIIK_05995	0.62	+0.4
1,317,060	-	gstA	OKGIIK_05995	0.62	-0.6
1,317,060	-	gstA	OKGIIK_05995	0.62	+1.9
1,317,060	-	gstA	OKGIIK_05995	0.62	-0.0
1,317,060	-	gstA	OKGIIK_05995	0.62	+0.8
1,317,060	-	gstA	OKGIIK_05995	0.62	+1.0