Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_05960

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
1,306,968	+				-1.1
1,306,968	+				+1.5
1,306,968	+				-0.8
1,306,969	-				+0.4
1,306,969	-				-2.2
1,307,419	+	tauE	OKGIIK_05955	0.57	-1.8
1,307,419	+	tauE	OKGIIK_05955	0.57	+3.2
1,307,419	+	tauE	OKGIIK_05955	0.57	+1.5
1,307,419	+	tauE	OKGIIK_05955	0.57	+0.6
1,307,419	+	tauE	OKGIIK_05955	0.57	+1.4
1,307,419	+	tauE	OKGIIK_05955	0.57	+2.3
1,307,419	+	tauE	OKGIIK_05955	0.57	-0.8
1,307,419	+	tauE	OKGIIK_05955	0.57	+1.5
1,307,419	+	tauE	OKGIIK_05955	0.57	+0.8
1,307,419	+	tauE	OKGIIK_05955	0.57	+2.1
1,307,419	+	tauE	OKGIIK_05955	0.57	+0.3
1,307,419	+	tauE	OKGIIK_05955	0.57	+2.9
1,307,419	+	tauE	OKGIIK_05955	0.57	+0.6
1,307,419	+	tauE	OKGIIK_05955	0.57	+2.6
1,307,420	-	tauE	OKGIIK_05955	0.57	+0.0
1,307,420	-	tauE	OKGIIK_05955	0.57	-1.0
1,307,420	-	tauE	OKGIIK_05955	0.57	-0.2
1,307,420	-	tauE	OKGIIK_05955	0.57	+0.8
1,307,420	-	tauE	OKGIIK_05955	0.57	+0.0
1,307,420	-	tauE	OKGIIK_05955	0.57	+0.8
1,307,420	-	tauE	OKGIIK_05955	0.57	-0.1
1,307,420	-	tauE	OKGIIK_05955	0.57	-0.2
1,307,420	-	tauE	OKGIIK_05955	0.57	+0.1
1,307,420	-	tauE	OKGIIK_05955	0.57	+0.0
1,307,470	+	tauE	OKGIIK_05955	0.63	+2.4
1,307,470	+	tauE	OKGIIK_05955	0.63	+0.9
1,307,470	+	tauE	OKGIIK_05955	0.63	+0.8
1,307,470	+	tauE	OKGIIK_05955	0.63	+0.4
1,307,470	+	tauE	OKGIIK_05955	0.63	+0.4
1,307,470	+	tauE	OKGIIK_05955	0.63	+1.6
1,307,470	+	tauE	OKGIIK_05955	0.63	+2.6
1,307,470	+	tauE	OKGIIK_05955	0.63	+0.0
1,307,470	+	tauE	OKGIIK_05955	0.63	+2.0
1,307,470	+	tauE	OKGIIK_05955	0.63	-0.3
1,307,470	+	tauE	OKGIIK_05955	0.63	+1.4
1,307,471	-	tauE	OKGIIK_05955	0.64	+0.2
1,307,471	-	tauE	OKGIIK_05955	0.64	-0.2
1,307,471	-	tauE	OKGIIK_05955	0.64	-1.6
1,307,471	-	tauE	OKGIIK_05955	0.64	+1.0
1,307,471	-	tauE	OKGIIK_05955	0.64	+0.3
1,307,471	-	tauE	OKGIIK_05955	0.64	+1.0
1,307,471	-	tauE	OKGIIK_05955	0.64	+1.5
1,307,471	-	tauE	OKGIIK_05955	0.64	-1.4
1,307,471	-	tauE	OKGIIK_05955	0.64	+0.0
1,307,471	-	tauE	OKGIIK_05955	0.64	+0.0
1,307,590	+	tauE	OKGIIK_05955	0.79	+1.5
1,307,591	-	tauE	OKGIIK_05955	0.80	+1.1
1,307,591	-	tauE	OKGIIK_05955	0.80	-0.2
1,307,662	+	tauE	OKGIIK_05955	0.89	+2.0
1,307,662	+	tauE	OKGIIK_05955	0.89	+2.7
1,307,663	-	tauE	OKGIIK_05955	0.89	-0.0
1,307,663	-	tauE	OKGIIK_05955	0.89	+0.0
1,307,663	-	tauE	OKGIIK_05955	0.89	+1.2
1,307,777	+				+0.2
1,307,777	+				+0.5
1,307,777	+				+0.9
1,307,777	+				-0.9
1,307,777	+				+1.8
1,307,778	-				-0.2
1,307,778	-				+0.1
1,307,778	-				-0.6
1,307,784	+				+0.0
1,307,784	+				-0.2
1,307,784	+				-0.8
1,307,812	+				+0.4
1,307,812	+				+3.5
1,307,812	+				+2.6
1,307,812	+				+1.8
1,307,812	+				+1.5
1,307,813	-				+0.0
1,307,825	+				+1.8
1,307,825	+				+1.8
1,307,825	+				+0.6
1,307,825	+				-0.5
1,307,825	+				+1.4
1,307,825	+				+0.2
1,307,826	-				-0.5
1,307,826	-				+2.4
1,307,826	-				-2.4
1,307,826	-				+0.4
1,307,826	-				+0.4
1,307,870	+				+0.4
1,307,917	+				-0.6
1,308,014	+				+1.4
1,308,015	-				-0.2
1,308,015	-				-0.6
1,308,015	-				-0.5
1,308,212	+		OKGIIK_05960	0.17	+1.1
1,308,383	+		OKGIIK_05960	0.26	+0.0
1,308,383	+		OKGIIK_05960	0.26	-0.4
1,308,383	+		OKGIIK_05960	0.26	+0.6
1,308,383	+		OKGIIK_05960	0.26	-1.0
1,308,384	-		OKGIIK_05960	0.26	-0.1
1,308,384	-		OKGIIK_05960	0.26	-0.6
1,308,717	-		OKGIIK_05960	0.45	+0.0
1,309,076	+		OKGIIK_05960	0.65	-0.2
1,309,076	+		OKGIIK_05960	0.65	+0.6
1,309,076	+		OKGIIK_05960	0.65	+2.5
1,309,142	+		OKGIIK_05960	0.68	-1.0
1,309,143	-		OKGIIK_05960	0.68	+0.8
1,309,403	+		OKGIIK_05960	0.83	+1.4
1,309,404	-		OKGIIK_05960	0.83	+0.1
1,309,490	+		OKGIIK_05960	0.88	+0.2
1,309,490	+		OKGIIK_05960	0.88	+2.7
1,309,490	+		OKGIIK_05960	0.88	+1.1
1,309,490	+		OKGIIK_05960	0.88	+0.1
1,309,491	-		OKGIIK_05960	0.88	+0.0
1,309,529	+		OKGIIK_05960	0.90	-1.7
1,309,529	+		OKGIIK_05960	0.90	+1.9
1,309,529	+		OKGIIK_05960	0.90	+1.3
1,309,529	+		OKGIIK_05960	0.90	+0.7
1,309,529	+		OKGIIK_05960	0.90	+3.1
1,309,529	+		OKGIIK_05960	0.90	+0.5
1,309,530	-		OKGIIK_05960	0.90	+0.4
1,309,530	-		OKGIIK_05960	0.90	+0.0
1,309,530	-		OKGIIK_05960	0.90	+0.4
1,309,530	-		OKGIIK_05960	0.90	+0.7
1,309,530	-		OKGIIK_05960	0.90	-0.6
1,309,530	-		OKGIIK_05960	0.90	-1.0
1,309,559	+				+0.0
1,309,559	+				-1.5
1,309,559	+				+0.9
1,309,559	+				-0.2
1,309,559	+				+1.1
1,309,559	+				+2.5
1,309,559	+				-1.3
1,309,559	+				+2.7
1,309,559	+				-0.1
1,309,560	-				-0.5
1,309,560	-				+1.4
1,309,560	-				-1.3
1,309,560	-				+0.2
1,309,560	-				+0.8
1,309,706	+				+0.9
1,309,706	+				+1.6
1,309,706	+				-0.2
1,309,707	-				-1.6
1,309,707	-				-1.5
1,309,707	-				-0.3
1,309,707	-				-0.6
1,309,716	+				+1.3
1,309,717	-				+1.1
1,309,717	-				-1.5
1,309,717	-				-0.2
1,309,811	+				+1.6
1,309,811	+				-0.5
1,309,811	+				+0.5
1,309,811	+				+0.4
1,309,811	+				-1.3
1,309,811	+				+0.7
1,309,811	+				-0.2
1,309,811	+				+0.4
1,309,811	+				-1.0
1,309,811	+				+0.9
1,309,811	+				+0.4
1,309,811	+				-0.1
1,309,811	+				+0.1
1,309,811	+				+0.4
1,309,811	+				-0.2
1,309,811	+				-0.5
1,309,811	+				-0.2
1,309,811	+				-0.3
1,309,811	+				-0.6
1,309,812	-				+0.0
1,309,812	-				-1.1
1,309,812	-				-1.3
1,309,812	-				+0.9
1,309,812	-				+0.5
1,309,812	-				+1.5
1,309,923	+				+0.4
1,309,923	+				-0.8
1,309,923	+				+0.8
1,309,923	+				-0.5
1,309,923	+				+0.6
1,309,924	-				+0.8
1,309,924	-				-0.6
1,309,924	-				+0.4
1,309,924	-				+0.7
1,309,983	+	cysI	OKGIIK_05965	0.11	-0.3
1,309,983	+	cysI	OKGIIK_05965	0.11	+2.8
1,309,984	-	cysI	OKGIIK_05965	0.11	-0.8
1,309,984	-	cysI	OKGIIK_05965	0.11	+0.6
1,310,259	+	cysI	OKGIIK_05965	0.28	+1.0
1,310,259	+	cysI	OKGIIK_05965	0.28	-0.4
1,310,259	+	cysI	OKGIIK_05965	0.28	+1.4
1,310,259	+	cysI	OKGIIK_05965	0.28	-2.6
1,310,259	+	cysI	OKGIIK_05965	0.28	-0.1
1,310,259	+	cysI	OKGIIK_05965	0.28	-0.6
1,310,259	+	cysI	OKGIIK_05965	0.28	-1.6
1,310,259	+	cysI	OKGIIK_05965	0.28	-0.4
1,310,259	+	cysI	OKGIIK_05965	0.28	-0.6
1,310,259	+	cysI	OKGIIK_05965	0.28	+0.0
1,310,259	+	cysI	OKGIIK_05965	0.28	+1.5
1,310,260	-	cysI	OKGIIK_05965	0.28	-0.2
1,310,260	-	cysI	OKGIIK_05965	0.28	+0.4
1,310,260	-	cysI	OKGIIK_05965	0.28	-0.1
1,310,260	-	cysI	OKGIIK_05965	0.28	+0.6
1,310,260	-	cysI	OKGIIK_05965	0.28	-0.5
1,310,260	-	cysI	OKGIIK_05965	0.28	-0.9
1,310,260	-	cysI	OKGIIK_05965	0.28	-1.0
1,310,260	-	cysI	OKGIIK_05965	0.28	-0.9
1,310,260	-	cysI	OKGIIK_05965	0.28	+0.4
1,310,311	-	cysI	OKGIIK_05965	0.31	-0.4
1,310,311	-	cysI	OKGIIK_05965	0.31	+2.6
1,310,382	+	cysI	OKGIIK_05965	0.35	+0.5
1,310,382	+	cysI	OKGIIK_05965	0.35	-1.6
1,310,394	+	cysI	OKGIIK_05965	0.36	+0.0
1,310,394	+	cysI	OKGIIK_05965	0.36	-0.6
1,310,394	+	cysI	OKGIIK_05965	0.36	-0.8
1,310,394	+	cysI	OKGIIK_05965	0.36	+0.0
1,310,394	+	cysI	OKGIIK_05965	0.36	-0.2
1,310,394	+	cysI	OKGIIK_05965	0.36	+0.0
1,310,394	+	cysI	OKGIIK_05965	0.36	-0.1
1,310,394	+	cysI	OKGIIK_05965	0.36	+0.0
1,310,394	+	cysI	OKGIIK_05965	0.36	+1.9
1,310,395	-	cysI	OKGIIK_05965	0.36	-1.0
1,310,395	-	cysI	OKGIIK_05965	0.36	+1.0
1,310,395	-	cysI	OKGIIK_05965	0.36	-1.6
1,310,395	-	cysI	OKGIIK_05965	0.36	+1.4
1,310,395	-	cysI	OKGIIK_05965	0.36	+0.4
1,310,395	-	cysI	OKGIIK_05965	0.36	+0.2
1,310,395	-	cysI	OKGIIK_05965	0.36	+0.8
1,310,395	-	cysI	OKGIIK_05965	0.36	-0.6
1,310,395	-	cysI	OKGIIK_05965	0.36	-0.3
1,310,562	+	cysI	OKGIIK_05965	0.45	-1.2
1,310,562	+	cysI	OKGIIK_05965	0.45	+0.1
1,310,563	-	cysI	OKGIIK_05965	0.45	+1.4
1,310,563	-	cysI	OKGIIK_05965	0.45	+0.4
1,310,688	+	cysI	OKGIIK_05965	0.53	-0.1
1,310,688	+	cysI	OKGIIK_05965	0.53	-0.1
1,310,688	+	cysI	OKGIIK_05965	0.53	+0.4
1,310,688	+	cysI	OKGIIK_05965	0.53	+0.1
1,310,689	-	cysI	OKGIIK_05965	0.53	-0.6
1,310,689	-	cysI	OKGIIK_05965	0.53	+0.0
1,310,689	-	cysI	OKGIIK_05965	0.53	-0.8