Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_05530

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_05525 and OKGIIK_05530 overlap by 4 nucleotidesOKGIIK_05530 and OKGIIK_05535 are separated by 92 nucleotides OKGIIK_05525: OKGIIK_05525 - Nucleotidyl transferase AbiEii toxin, Type IV TA system, at 1,211,701 to 1,212,630 _05525 OKGIIK_05530: OKGIIK_05530 - Transcriptional regulator-like protein, at 1,212,627 to 1,213,241 _05530 OKGIIK_05535: OKGIIK_05535 - XRE family transcriptional regulator, at 1,213,334 to 1,217,395 _05535 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -2 -1 0 1 2at 1211.690 kb on + strandat 1211.690 kb on + strandat 1211.690 kb on + strandat 1211.690 kb on + strandat 1211.690 kb on + strandat 1211.691 kb on - strandat 1211.691 kb on - strandat 1211.702 kb on + strandat 1211.702 kb on + strandat 1211.738 kb on + strandat 1211.739 kb on - strandat 1211.739 kb on - strandat 1211.739 kb on - strandat 1211.739 kb on - strandat 1211.764 kb on + strandat 1211.764 kb on + strandat 1211.776 kb on - strandat 1211.964 kb on + strand, within OKGIIK_05525at 1211.964 kb on + strand, within OKGIIK_05525at 1211.965 kb on - strand, within OKGIIK_05525at 1211.965 kb on - strand, within OKGIIK_05525at 1211.965 kb on - strand, within OKGIIK_05525at 1212.000 kb on - strand, within OKGIIK_05525at 1212.107 kb on + strand, within OKGIIK_05525at 1212.107 kb on + strand, within OKGIIK_05525at 1212.107 kb on + strand, within OKGIIK_05525at 1212.107 kb on + strand, within OKGIIK_05525at 1212.107 kb on + strand, within OKGIIK_05525at 1212.107 kb on + strand, within OKGIIK_05525at 1212.107 kb on + strand, within OKGIIK_05525at 1212.107 kb on + strand, within OKGIIK_05525at 1212.107 kb on + strand, within OKGIIK_05525at 1212.107 kb on + strand, within OKGIIK_05525at 1212.108 kb on - strand, within OKGIIK_05525at 1212.108 kb on - strand, within OKGIIK_05525at 1212.108 kb on - strand, within OKGIIK_05525at 1212.108 kb on - strand, within OKGIIK_05525at 1212.108 kb on - strand, within OKGIIK_05525at 1212.108 kb on - strand, within OKGIIK_05525at 1212.108 kb on - strand, within OKGIIK_05525at 1212.108 kb on - strand, within OKGIIK_05525at 1212.108 kb on - strand, within OKGIIK_05525at 1212.182 kb on + strand, within OKGIIK_05525at 1212.182 kb on + strand, within OKGIIK_05525at 1212.182 kb on + strand, within OKGIIK_05525at 1212.182 kb on + strand, within OKGIIK_05525at 1212.182 kb on + strand, within OKGIIK_05525at 1212.182 kb on + strand, within OKGIIK_05525at 1212.182 kb on + strand, within OKGIIK_05525at 1212.182 kb on + strand, within OKGIIK_05525at 1212.182 kb on + strand, within OKGIIK_05525at 1212.182 kb on + strand, within OKGIIK_05525at 1212.182 kb on + strand, within OKGIIK_05525at 1212.182 kb on + strand, within OKGIIK_05525at 1212.182 kb on + strand, within OKGIIK_05525at 1212.183 kb on - strand, within OKGIIK_05525at 1212.183 kb on - strand, within OKGIIK_05525at 1212.183 kb on - strand, within OKGIIK_05525at 1212.183 kb on - strand, within OKGIIK_05525at 1212.208 kb on + strand, within OKGIIK_05525at 1212.255 kb on + strand, within OKGIIK_05525at 1212.255 kb on + strand, within OKGIIK_05525at 1212.255 kb on + strand, within OKGIIK_05525at 1212.255 kb on + strand, within OKGIIK_05525at 1212.255 kb on + strand, within OKGIIK_05525at 1212.255 kb on + strand, within OKGIIK_05525at 1212.255 kb on + strand, within OKGIIK_05525at 1212.255 kb on + strand, within OKGIIK_05525at 1212.255 kb on + strand, within OKGIIK_05525at 1212.255 kb on + strand, within OKGIIK_05525at 1212.255 kb on + strand, within OKGIIK_05525at 1212.255 kb on + strand, within OKGIIK_05525at 1212.255 kb on + strand, within OKGIIK_05525at 1212.256 kb on - strand, within OKGIIK_05525at 1212.256 kb on - strand, within OKGIIK_05525at 1212.256 kb on - strand, within OKGIIK_05525at 1212.256 kb on - strand, within OKGIIK_05525at 1212.256 kb on - strand, within OKGIIK_05525at 1212.256 kb on - strand, within OKGIIK_05525at 1212.256 kb on - strand, within OKGIIK_05525at 1212.263 kb on + strand, within OKGIIK_05525at 1212.263 kb on + strand, within OKGIIK_05525at 1212.263 kb on + strand, within OKGIIK_05525at 1212.263 kb on + strand, within OKGIIK_05525at 1212.263 kb on + strand, within OKGIIK_05525at 1212.263 kb on + strand, within OKGIIK_05525at 1212.263 kb on + strand, within OKGIIK_05525at 1212.263 kb on + strand, within OKGIIK_05525at 1212.263 kb on + strand, within OKGIIK_05525at 1212.263 kb on + strand, within OKGIIK_05525at 1212.264 kb on - strand, within OKGIIK_05525at 1212.264 kb on - strand, within OKGIIK_05525at 1212.264 kb on - strand, within OKGIIK_05525at 1212.264 kb on - strand, within OKGIIK_05525at 1212.264 kb on - strand, within OKGIIK_05525at 1212.264 kb on - strand, within OKGIIK_05525at 1212.264 kb on - strand, within OKGIIK_05525at 1212.264 kb on - strand, within OKGIIK_05525at 1212.425 kb on + strand, within OKGIIK_05525at 1212.425 kb on + strand, within OKGIIK_05525at 1212.425 kb on + strand, within OKGIIK_05525at 1212.425 kb on + strand, within OKGIIK_05525at 1212.426 kb on - strand, within OKGIIK_05525at 1212.426 kb on - strand, within OKGIIK_05525at 1212.426 kb on - strand, within OKGIIK_05525at 1212.444 kb on + strand, within OKGIIK_05525at 1212.445 kb on - strand, within OKGIIK_05525at 1212.445 kb on - strand, within OKGIIK_05525at 1212.445 kb on - strand, within OKGIIK_05525at 1212.445 kb on - strand, within OKGIIK_05525at 1212.451 kb on + strand, within OKGIIK_05525at 1212.451 kb on + strand, within OKGIIK_05525at 1212.451 kb on + strand, within OKGIIK_05525at 1212.451 kb on + strand, within OKGIIK_05525at 1212.451 kb on + strand, within OKGIIK_05525at 1212.451 kb on + strand, within OKGIIK_05525at 1212.452 kb on - strand, within OKGIIK_05525at 1212.452 kb on - strand, within OKGIIK_05525at 1212.452 kb on - strand, within OKGIIK_05525at 1212.452 kb on - strand, within OKGIIK_05525at 1212.452 kb on - strand, within OKGIIK_05525at 1212.452 kb on - strand, within OKGIIK_05525at 1212.452 kb on - strand, within OKGIIK_05525at 1212.452 kb on - strand, within OKGIIK_05525at 1212.469 kb on + strand, within OKGIIK_05525at 1212.469 kb on + strand, within OKGIIK_05525at 1212.469 kb on + strand, within OKGIIK_05525at 1212.469 kb on + strand, within OKGIIK_05525at 1212.469 kb on + strand, within OKGIIK_05525at 1212.469 kb on + strand, within OKGIIK_05525at 1212.469 kb on + strand, within OKGIIK_05525at 1212.469 kb on + strand, within OKGIIK_05525at 1212.470 kb on - strand, within OKGIIK_05525at 1212.470 kb on - strand, within OKGIIK_05525at 1212.470 kb on - strand, within OKGIIK_05525at 1212.470 kb on - strand, within OKGIIK_05525at 1212.470 kb on - strand, within OKGIIK_05525at 1212.470 kb on - strand, within OKGIIK_05525at 1212.470 kb on - strand, within OKGIIK_05525at 1212.470 kb on - strand, within OKGIIK_05525at 1212.470 kb on - strand, within OKGIIK_05525at 1212.470 kb on - strand, within OKGIIK_05525at 1212.470 kb on - strand, within OKGIIK_05525at 1212.470 kb on - strand, within OKGIIK_05525at 1212.473 kb on + strand, within OKGIIK_05525at 1212.473 kb on + strand, within OKGIIK_05525at 1212.473 kb on + strand, within OKGIIK_05525at 1212.473 kb on + strand, within OKGIIK_05525at 1212.473 kb on + strand, within OKGIIK_05525at 1212.473 kb on + strand, within OKGIIK_05525at 1212.473 kb on + strand, within OKGIIK_05525at 1212.473 kb on + strand, within OKGIIK_05525at 1212.473 kb on + strand, within OKGIIK_05525at 1212.473 kb on + strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.474 kb on - strand, within OKGIIK_05525at 1212.527 kb on + strand, within OKGIIK_05525at 1212.548 kb on + strandat 1212.548 kb on + strandat 1212.548 kb on + strandat 1212.548 kb on + strandat 1212.548 kb on + strandat 1212.549 kb on - strandat 1212.621 kb on + strandat 1212.621 kb on + strandat 1212.622 kb on - strandat 1212.622 kb on - strandat 1212.622 kb on - strandat 1212.622 kb on - strandat 1212.641 kb on + strandat 1212.641 kb on + strandat 1212.641 kb on + strandat 1212.642 kb on - strandat 1212.642 kb on - strandat 1212.642 kb on - strandat 1213.223 kb on + strandat 1213.223 kb on + strandat 1213.226 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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1,211,690 + +0.3
1,211,690 + -0.5
1,211,690 + +1.3
1,211,690 + -0.5
1,211,690 + +0.0
1,211,691 - -1.0
1,211,691 - -1.2
1,211,702 + +1.1
1,211,702 + -0.5
1,211,738 + -2.4
1,211,739 - +0.7
1,211,739 - -1.5
1,211,739 - -1.1
1,211,739 - -0.2
1,211,764 + +0.0
1,211,764 + +1.0
1,211,776 - -0.8
1,211,964 + OKGIIK_05525 0.28 +0.5
1,211,964 + OKGIIK_05525 0.28 +0.2
1,211,965 - OKGIIK_05525 0.28 +0.3
1,211,965 - OKGIIK_05525 0.28 -0.8
1,211,965 - OKGIIK_05525 0.28 +0.6
1,212,000 - OKGIIK_05525 0.32 -0.8
1,212,107 + OKGIIK_05525 0.44 -0.4
1,212,107 + OKGIIK_05525 0.44 -0.7
1,212,107 + OKGIIK_05525 0.44 -1.1
1,212,107 + OKGIIK_05525 0.44 -0.5
1,212,107 + OKGIIK_05525 0.44 -0.5
1,212,107 + OKGIIK_05525 0.44 +2.5
1,212,107 + OKGIIK_05525 0.44 -0.3
1,212,107 + OKGIIK_05525 0.44 +1.3
1,212,107 + OKGIIK_05525 0.44 +1.1
1,212,107 + OKGIIK_05525 0.44 -0.5
1,212,108 - OKGIIK_05525 0.44 +0.2
1,212,108 - OKGIIK_05525 0.44 +1.0
1,212,108 - OKGIIK_05525 0.44 +1.0
1,212,108 - OKGIIK_05525 0.44 +0.3
1,212,108 - OKGIIK_05525 0.44 +0.0
1,212,108 - OKGIIK_05525 0.44 +0.3
1,212,108 - OKGIIK_05525 0.44 -2.1
1,212,108 - OKGIIK_05525 0.44 +0.2
1,212,108 - OKGIIK_05525 0.44 -1.0
1,212,182 + OKGIIK_05525 0.52 +1.3
1,212,182 + OKGIIK_05525 0.52 +0.4
1,212,182 + OKGIIK_05525 0.52 -2.1
1,212,182 + OKGIIK_05525 0.52 -1.5
1,212,182 + OKGIIK_05525 0.52 -0.3
1,212,182 + OKGIIK_05525 0.52 -0.5
1,212,182 + OKGIIK_05525 0.52 -0.7
1,212,182 + OKGIIK_05525 0.52 -1.3
1,212,182 + OKGIIK_05525 0.52 -1.1
1,212,182 + OKGIIK_05525 0.52 +0.7
1,212,182 + OKGIIK_05525 0.52 -0.2
1,212,182 + OKGIIK_05525 0.52 -0.2
1,212,182 + OKGIIK_05525 0.52 -0.1
1,212,183 - OKGIIK_05525 0.52 -0.7
1,212,183 - OKGIIK_05525 0.52 -1.3
1,212,183 - OKGIIK_05525 0.52 +0.2
1,212,183 - OKGIIK_05525 0.52 -0.3
1,212,208 + OKGIIK_05525 0.55 +0.4
1,212,255 + OKGIIK_05525 0.60 -0.7
1,212,255 + OKGIIK_05525 0.60 +0.1
1,212,255 + OKGIIK_05525 0.60 +0.3
1,212,255 + OKGIIK_05525 0.60 -0.5
1,212,255 + OKGIIK_05525 0.60 -1.3
1,212,255 + OKGIIK_05525 0.60 -0.7
1,212,255 + OKGIIK_05525 0.60 -0.1
1,212,255 + OKGIIK_05525 0.60 +1.5
1,212,255 + OKGIIK_05525 0.60 -0.7
1,212,255 + OKGIIK_05525 0.60 +0.7
1,212,255 + OKGIIK_05525 0.60 -0.8
1,212,255 + OKGIIK_05525 0.60 +0.8
1,212,255 + OKGIIK_05525 0.60 -1.4
1,212,256 - OKGIIK_05525 0.60 -0.9
1,212,256 - OKGIIK_05525 0.60 -0.6
1,212,256 - OKGIIK_05525 0.60 +1.7
1,212,256 - OKGIIK_05525 0.60 -1.4
1,212,256 - OKGIIK_05525 0.60 -1.2
1,212,256 - OKGIIK_05525 0.60 +0.0
1,212,256 - OKGIIK_05525 0.60 +0.5
1,212,263 + OKGIIK_05525 0.60 +0.2
1,212,263 + OKGIIK_05525 0.60 -1.1
1,212,263 + OKGIIK_05525 0.60 -0.5
1,212,263 + OKGIIK_05525 0.60 -0.7
1,212,263 + OKGIIK_05525 0.60 +0.9
1,212,263 + OKGIIK_05525 0.60 +1.0
1,212,263 + OKGIIK_05525 0.60 -1.3
1,212,263 + OKGIIK_05525 0.60 +0.5
1,212,263 + OKGIIK_05525 0.60 +0.2
1,212,263 + OKGIIK_05525 0.60 -0.4
1,212,264 - OKGIIK_05525 0.61 +0.2
1,212,264 - OKGIIK_05525 0.61 +1.7
1,212,264 - OKGIIK_05525 0.61 -0.7
1,212,264 - OKGIIK_05525 0.61 -0.1
1,212,264 - OKGIIK_05525 0.61 +1.9
1,212,264 - OKGIIK_05525 0.61 -1.1
1,212,264 - OKGIIK_05525 0.61 +0.2
1,212,264 - OKGIIK_05525 0.61 -0.5
1,212,425 + OKGIIK_05525 0.78 -0.6
1,212,425 + OKGIIK_05525 0.78 +1.9
1,212,425 + OKGIIK_05525 0.78 -0.1
1,212,425 + OKGIIK_05525 0.78 -0.1
1,212,426 - OKGIIK_05525 0.78 -1.6
1,212,426 - OKGIIK_05525 0.78 -0.5
1,212,426 - OKGIIK_05525 0.78 +1.0
1,212,444 + OKGIIK_05525 0.80 -1.3
1,212,445 - OKGIIK_05525 0.80 +0.3
1,212,445 - OKGIIK_05525 0.80 -1.1
1,212,445 - OKGIIK_05525 0.80 +0.5
1,212,445 - OKGIIK_05525 0.80 +1.0
1,212,451 + OKGIIK_05525 0.81 +0.0
1,212,451 + OKGIIK_05525 0.81 +0.2
1,212,451 + OKGIIK_05525 0.81 -1.0
1,212,451 + OKGIIK_05525 0.81 -0.2
1,212,451 + OKGIIK_05525 0.81 +0.5
1,212,451 + OKGIIK_05525 0.81 +0.8
1,212,452 - OKGIIK_05525 0.81 +0.3
1,212,452 - OKGIIK_05525 0.81 -0.4
1,212,452 - OKGIIK_05525 0.81 +0.4
1,212,452 - OKGIIK_05525 0.81 +0.0
1,212,452 - OKGIIK_05525 0.81 -0.7
1,212,452 - OKGIIK_05525 0.81 -0.8
1,212,452 - OKGIIK_05525 0.81 -1.8
1,212,452 - OKGIIK_05525 0.81 +1.2
1,212,469 + OKGIIK_05525 0.83 -0.8
1,212,469 + OKGIIK_05525 0.83 -0.8
1,212,469 + OKGIIK_05525 0.83 +0.0
1,212,469 + OKGIIK_05525 0.83 +0.0
1,212,469 + OKGIIK_05525 0.83 +0.6
1,212,469 + OKGIIK_05525 0.83 +0.0
1,212,469 + OKGIIK_05525 0.83 +0.3
1,212,469 + OKGIIK_05525 0.83 -0.1
1,212,470 - OKGIIK_05525 0.83 +0.6
1,212,470 - OKGIIK_05525 0.83 -1.3
1,212,470 - OKGIIK_05525 0.83 +0.6
1,212,470 - OKGIIK_05525 0.83 -0.5
1,212,470 - OKGIIK_05525 0.83 -0.7
1,212,470 - OKGIIK_05525 0.83 -0.5
1,212,470 - OKGIIK_05525 0.83 +0.0
1,212,470 - OKGIIK_05525 0.83 -2.3
1,212,470 - OKGIIK_05525 0.83 +0.2
1,212,470 - OKGIIK_05525 0.83 -0.1
1,212,470 - OKGIIK_05525 0.83 +0.3
1,212,470 - OKGIIK_05525 0.83 +0.3
1,212,473 + OKGIIK_05525 0.83 +0.3
1,212,473 + OKGIIK_05525 0.83 +1.6
1,212,473 + OKGIIK_05525 0.83 +0.0
1,212,473 + OKGIIK_05525 0.83 +1.3
1,212,473 + OKGIIK_05525 0.83 -1.2
1,212,473 + OKGIIK_05525 0.83 -0.1
1,212,473 + OKGIIK_05525 0.83 -1.1
1,212,473 + OKGIIK_05525 0.83 -1.6
1,212,473 + OKGIIK_05525 0.83 +1.7
1,212,473 + OKGIIK_05525 0.83 +1.3
1,212,474 - OKGIIK_05525 0.83 -0.7
1,212,474 - OKGIIK_05525 0.83 -1.3
1,212,474 - OKGIIK_05525 0.83 -0.6
1,212,474 - OKGIIK_05525 0.83 -0.8
1,212,474 - OKGIIK_05525 0.83 +0.0
1,212,474 - OKGIIK_05525 0.83 +0.0
1,212,474 - OKGIIK_05525 0.83 -0.2
1,212,474 - OKGIIK_05525 0.83 +0.0
1,212,474 - OKGIIK_05525 0.83 +0.0
1,212,474 - OKGIIK_05525 0.83 -0.4
1,212,474 - OKGIIK_05525 0.83 -1.7
1,212,474 - OKGIIK_05525 0.83 -0.2
1,212,474 - OKGIIK_05525 0.83 +0.1
1,212,474 - OKGIIK_05525 0.83 -0.5
1,212,474 - OKGIIK_05525 0.83 +0.2
1,212,474 - OKGIIK_05525 0.83 +2.0
1,212,527 + OKGIIK_05525 0.89 +0.6
1,212,548 + +0.2
1,212,548 + -0.4
1,212,548 + -0.7
1,212,548 + +0.6
1,212,548 + +0.1
1,212,549 - +0.0
1,212,621 + +0.9
1,212,621 + +0.3
1,212,622 - +1.3
1,212,622 - +0.8
1,212,622 - -0.5
1,212,622 - +1.2
1,212,641 + +0.1
1,212,641 + +2.6
1,212,641 + -1.5
1,212,642 - +0.0
1,212,642 - -0.4
1,212,642 - -1.4
1,213,223 + -0.3
1,213,223 + +0.0
1,213,226 + +1.1

Or see this region's nucleotide sequence