Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_04915

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_04905 and OKGIIK_04910 are separated by 101 nucleotidesOKGIIK_04910 and OKGIIK_04915 overlap by 4 nucleotidesOKGIIK_04915 and OKGIIK_04920 are separated by 97 nucleotidesOKGIIK_04920 and OKGIIK_04925 are separated by 58 nucleotides OKGIIK_04905: OKGIIK_04905 - DNA-binding response regulator, at 1,068,274 to 1,068,951 _04905 OKGIIK_04910: OKGIIK_04910 - hypothetical protein, at 1,069,053 to 1,069,340 _04910 OKGIIK_04915: OKGIIK_04915 - Ferric uptake regulation protein, at 1,069,337 to 1,069,849 _04915 OKGIIK_04920: OKGIIK_04920 - MerC mercury resistance protein, at 1,069,947 to 1,070,381 _04920 OKGIIK_04925: OKGIIK_04925 - Zinc transporter ZitB, at 1,070,440 to 1,071,384 _04925 Position (kb) 1069 1070Strain fitness (log2 ratio) -2 -1 0 1 2at 1068.364 kb on + strand, within OKGIIK_04905at 1068.364 kb on + strand, within OKGIIK_04905at 1068.364 kb on + strand, within OKGIIK_04905at 1068.364 kb on + strand, within OKGIIK_04905at 1068.365 kb on - strand, within OKGIIK_04905at 1068.365 kb on - strand, within OKGIIK_04905at 1068.365 kb on - strand, within OKGIIK_04905at 1068.365 kb on - strand, within OKGIIK_04905at 1068.365 kb on - strand, within OKGIIK_04905at 1068.365 kb on - strand, within OKGIIK_04905at 1068.365 kb on - strand, within OKGIIK_04905at 1068.365 kb on - strand, within OKGIIK_04905at 1068.404 kb on + strand, within OKGIIK_04905at 1068.404 kb on + strand, within OKGIIK_04905at 1068.467 kb on + strand, within OKGIIK_04905at 1068.467 kb on + strand, within OKGIIK_04905at 1068.467 kb on + strand, within OKGIIK_04905at 1068.468 kb on - strand, within OKGIIK_04905at 1068.468 kb on - strand, within OKGIIK_04905at 1068.468 kb on - strand, within OKGIIK_04905at 1068.468 kb on - strand, within OKGIIK_04905at 1068.468 kb on - strand, within OKGIIK_04905at 1068.468 kb on - strand, within OKGIIK_04905at 1068.468 kb on - strand, within OKGIIK_04905at 1068.468 kb on - strand, within OKGIIK_04905at 1068.482 kb on + strand, within OKGIIK_04905at 1068.483 kb on - strand, within OKGIIK_04905at 1068.656 kb on + strand, within OKGIIK_04905at 1068.656 kb on + strand, within OKGIIK_04905at 1068.656 kb on + strand, within OKGIIK_04905at 1068.656 kb on + strand, within OKGIIK_04905at 1068.656 kb on + strand, within OKGIIK_04905at 1068.657 kb on - strand, within OKGIIK_04905at 1068.657 kb on - strand, within OKGIIK_04905at 1068.657 kb on - strand, within OKGIIK_04905at 1069.031 kb on + strandat 1069.336 kb on + strandat 1069.336 kb on + strandat 1069.336 kb on + strandat 1069.336 kb on + strandat 1069.336 kb on + strandat 1069.336 kb on + strandat 1069.336 kb on + strandat 1069.336 kb on + strandat 1069.336 kb on + strandat 1069.336 kb on + strandat 1069.337 kb on - strandat 1069.337 kb on - strandat 1069.337 kb on - strandat 1069.337 kb on - strandat 1069.337 kb on - strandat 1069.337 kb on - strandat 1069.337 kb on - strandat 1069.337 kb on - strandat 1069.337 kb on - strandat 1069.337 kb on - strandat 1069.337 kb on - strandat 1069.337 kb on - strandat 1069.337 kb on - strandat 1069.337 kb on - strandat 1069.535 kb on + strand, within OKGIIK_04915at 1069.536 kb on - strand, within OKGIIK_04915at 1069.536 kb on - strand, within OKGIIK_04915at 1069.536 kb on - strand, within OKGIIK_04915at 1069.536 kb on - strand, within OKGIIK_04915at 1069.592 kb on + strand, within OKGIIK_04915at 1069.592 kb on + strand, within OKGIIK_04915at 1069.592 kb on + strand, within OKGIIK_04915at 1069.592 kb on + strand, within OKGIIK_04915at 1069.885 kb on + strandat 1069.885 kb on + strandat 1069.886 kb on - strandat 1069.890 kb on + strandat 1069.891 kb on - strandat 1069.909 kb on + strandat 1069.909 kb on + strandat 1069.999 kb on + strand, within OKGIIK_04920at 1069.999 kb on + strand, within OKGIIK_04920at 1069.999 kb on + strand, within OKGIIK_04920at 1069.999 kb on + strand, within OKGIIK_04920at 1070.238 kb on + strand, within OKGIIK_04920at 1070.238 kb on + strand, within OKGIIK_04920at 1070.238 kb on + strand, within OKGIIK_04920at 1070.238 kb on + strand, within OKGIIK_04920at 1070.238 kb on + strand, within OKGIIK_04920at 1070.238 kb on + strand, within OKGIIK_04920at 1070.238 kb on + strand, within OKGIIK_04920at 1070.239 kb on - strand, within OKGIIK_04920at 1070.239 kb on - strand, within OKGIIK_04920at 1070.251 kb on - strand, within OKGIIK_04920at 1070.340 kb on + strandat 1070.340 kb on + strandat 1070.340 kb on + strandat 1070.340 kb on + strandat 1070.340 kb on + strandat 1070.340 kb on + strandat 1070.340 kb on + strandat 1070.340 kb on + strandat 1070.341 kb on - strandat 1070.409 kb on + strandat 1070.428 kb on + strandat 1070.428 kb on + strandat 1070.428 kb on + strandat 1070.428 kb on + strandat 1070.428 kb on + strandat 1070.428 kb on + strandat 1070.428 kb on + strandat 1070.428 kb on + strandat 1070.429 kb on - strandat 1070.429 kb on - strandat 1070.429 kb on - strandat 1070.429 kb on - strandat 1070.429 kb on - strandat 1070.429 kb on - strandat 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.701 kb on + strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.702 kb on - strand, within OKGIIK_04925at 1070.707 kb on + strand, within OKGIIK_04925at 1070.707 kb on + strand, within OKGIIK_04925at 1070.708 kb on - strand, within OKGIIK_04925at 1070.779 kb on + strand, within OKGIIK_04925at 1070.779 kb on + strand, within OKGIIK_04925at 1070.779 kb on + strand, within OKGIIK_04925

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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1,068,364 + OKGIIK_04905 0.13 -0.8
1,068,364 + OKGIIK_04905 0.13 -0.8
1,068,364 + OKGIIK_04905 0.13 +1.7
1,068,364 + OKGIIK_04905 0.13 +0.1
1,068,365 - OKGIIK_04905 0.13 +1.0
1,068,365 - OKGIIK_04905 0.13 -0.8
1,068,365 - OKGIIK_04905 0.13 -0.8
1,068,365 - OKGIIK_04905 0.13 -0.4
1,068,365 - OKGIIK_04905 0.13 +0.2
1,068,365 - OKGIIK_04905 0.13 +0.0
1,068,365 - OKGIIK_04905 0.13 +0.1
1,068,365 - OKGIIK_04905 0.13 +1.0
1,068,404 + OKGIIK_04905 0.19 +1.0
1,068,404 + OKGIIK_04905 0.19 +0.3
1,068,467 + OKGIIK_04905 0.28 -0.7
1,068,467 + OKGIIK_04905 0.28 -0.5
1,068,467 + OKGIIK_04905 0.28 -1.1
1,068,468 - OKGIIK_04905 0.29 -0.3
1,068,468 - OKGIIK_04905 0.29 +0.2
1,068,468 - OKGIIK_04905 0.29 +0.3
1,068,468 - OKGIIK_04905 0.29 -0.3
1,068,468 - OKGIIK_04905 0.29 -0.3
1,068,468 - OKGIIK_04905 0.29 +1.6
1,068,468 - OKGIIK_04905 0.29 +0.3
1,068,468 - OKGIIK_04905 0.29 +0.7
1,068,482 + OKGIIK_04905 0.31 +0.0
1,068,483 - OKGIIK_04905 0.31 +2.3
1,068,656 + OKGIIK_04905 0.56 -0.5
1,068,656 + OKGIIK_04905 0.56 +1.2
1,068,656 + OKGIIK_04905 0.56 -0.4
1,068,656 + OKGIIK_04905 0.56 -2.4
1,068,656 + OKGIIK_04905 0.56 +2.2
1,068,657 - OKGIIK_04905 0.56 +1.3
1,068,657 - OKGIIK_04905 0.56 +1.2
1,068,657 - OKGIIK_04905 0.56 +1.0
1,069,031 + -0.7
1,069,336 + -0.7
1,069,336 + -0.3
1,069,336 + +0.3
1,069,336 + -0.8
1,069,336 + +1.3
1,069,336 + -1.4
1,069,336 + +0.5
1,069,336 + -0.8
1,069,336 + +0.3
1,069,336 + -0.6
1,069,337 - -0.5
1,069,337 - +0.3
1,069,337 - -0.5
1,069,337 - -2.0
1,069,337 - +1.9
1,069,337 - -1.0
1,069,337 - -1.3
1,069,337 - +0.3
1,069,337 - +0.3
1,069,337 - +0.2
1,069,337 - -0.6
1,069,337 - -0.8
1,069,337 - +0.4
1,069,337 - +2.3
1,069,535 + OKGIIK_04915 0.39 +0.3
1,069,536 - OKGIIK_04915 0.39 +0.6
1,069,536 - OKGIIK_04915 0.39 +1.2
1,069,536 - OKGIIK_04915 0.39 -1.3
1,069,536 - OKGIIK_04915 0.39 +1.8
1,069,592 + OKGIIK_04915 0.50 +1.8
1,069,592 + OKGIIK_04915 0.50 +1.3
1,069,592 + OKGIIK_04915 0.50 -0.8
1,069,592 + OKGIIK_04915 0.50 -0.5
1,069,885 + +0.4
1,069,885 + -0.2
1,069,886 - +0.6
1,069,890 + -1.5
1,069,891 - -0.8
1,069,909 + -0.4
1,069,909 + +0.2
1,069,999 + OKGIIK_04920 0.12 +0.5
1,069,999 + OKGIIK_04920 0.12 +0.3
1,069,999 + OKGIIK_04920 0.12 -0.0
1,069,999 + OKGIIK_04920 0.12 +0.3
1,070,238 + OKGIIK_04920 0.67 -1.3
1,070,238 + OKGIIK_04920 0.67 -0.5
1,070,238 + OKGIIK_04920 0.67 -0.4
1,070,238 + OKGIIK_04920 0.67 -0.4
1,070,238 + OKGIIK_04920 0.67 +2.3
1,070,238 + OKGIIK_04920 0.67 +2.3
1,070,238 + OKGIIK_04920 0.67 -1.5
1,070,239 - OKGIIK_04920 0.67 +0.3
1,070,239 - OKGIIK_04920 0.67 -0.0
1,070,251 - OKGIIK_04920 0.70 -0.9
1,070,340 + +1.0
1,070,340 + +0.2
1,070,340 + +0.9
1,070,340 + +0.5
1,070,340 + +1.2
1,070,340 + +1.1
1,070,340 + -0.1
1,070,340 + -0.0
1,070,341 - -0.1
1,070,409 + +1.7
1,070,428 + +0.2
1,070,428 + +0.4
1,070,428 + +1.0
1,070,428 + +0.6
1,070,428 + +0.2
1,070,428 + -0.0
1,070,428 + -0.8
1,070,428 + +1.6
1,070,429 - -1.0
1,070,429 - +0.3
1,070,429 - -0.8
1,070,429 - -0.0
1,070,429 - +0.8
1,070,429 - -1.6
1,070,701 + OKGIIK_04925 0.28 +0.0
1,070,701 + OKGIIK_04925 0.28 +0.7
1,070,701 + OKGIIK_04925 0.28 -0.3
1,070,701 + OKGIIK_04925 0.28 +1.6
1,070,701 + OKGIIK_04925 0.28 -1.6
1,070,701 + OKGIIK_04925 0.28 +0.6
1,070,701 + OKGIIK_04925 0.28 -1.4
1,070,701 + OKGIIK_04925 0.28 -1.3
1,070,701 + OKGIIK_04925 0.28 +1.3
1,070,701 + OKGIIK_04925 0.28 -0.4
1,070,701 + OKGIIK_04925 0.28 -0.7
1,070,701 + OKGIIK_04925 0.28 +0.7
1,070,701 + OKGIIK_04925 0.28 +0.7
1,070,701 + OKGIIK_04925 0.28 -2.0
1,070,701 + OKGIIK_04925 0.28 +1.0
1,070,701 + OKGIIK_04925 0.28 +1.1
1,070,701 + OKGIIK_04925 0.28 +1.3
1,070,701 + OKGIIK_04925 0.28 -0.5
1,070,701 + OKGIIK_04925 0.28 -0.1
1,070,702 - OKGIIK_04925 0.28 -1.7
1,070,702 - OKGIIK_04925 0.28 -1.0
1,070,702 - OKGIIK_04925 0.28 +0.0
1,070,702 - OKGIIK_04925 0.28 +2.1
1,070,702 - OKGIIK_04925 0.28 -1.1
1,070,702 - OKGIIK_04925 0.28 -1.4
1,070,702 - OKGIIK_04925 0.28 +0.3
1,070,702 - OKGIIK_04925 0.28 -1.3
1,070,702 - OKGIIK_04925 0.28 +0.2
1,070,702 - OKGIIK_04925 0.28 +1.3
1,070,702 - OKGIIK_04925 0.28 -0.7
1,070,702 - OKGIIK_04925 0.28 +0.3
1,070,702 - OKGIIK_04925 0.28 +0.1
1,070,702 - OKGIIK_04925 0.28 +0.0
1,070,702 - OKGIIK_04925 0.28 -1.1
1,070,702 - OKGIIK_04925 0.28 -1.3
1,070,702 - OKGIIK_04925 0.28 -0.1
1,070,707 + OKGIIK_04925 0.28 -0.7
1,070,707 + OKGIIK_04925 0.28 +0.2
1,070,708 - OKGIIK_04925 0.28 -2.6
1,070,779 + OKGIIK_04925 0.36 -0.8
1,070,779 + OKGIIK_04925 0.36 +0.0
1,070,779 + OKGIIK_04925 0.36 +1.0

Or see this region's nucleotide sequence