Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_04810

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroC and OKGIIK_04810 are separated by 31 nucleotidesOKGIIK_04810 and asd are separated by 35 nucleotides OKGIIK_04805: aroC - chorismate synthase, at 1,045,032 to 1,046,120 aroC OKGIIK_04810: OKGIIK_04810 - D-glycerate dehydrogenase, at 1,046,152 to 1,047,147 _04810 OKGIIK_04815: asd - aspartate-semialdehyde dehydrogenase, at 1,047,183 to 1,048,214 asd Position (kb) 1046 1047 1048Strain fitness (log2 ratio) -2 -1 0 1at 1045.194 kb on + strand, within aroCat 1045.362 kb on + strand, within aroCat 1045.362 kb on + strand, within aroCat 1045.362 kb on + strand, within aroCat 1045.362 kb on + strand, within aroCat 1045.363 kb on - strand, within aroCat 1045.374 kb on + strand, within aroCat 1045.374 kb on + strand, within aroCat 1045.374 kb on + strand, within aroCat 1045.375 kb on - strand, within aroCat 1045.605 kb on + strand, within aroCat 1045.605 kb on + strand, within aroCat 1045.605 kb on + strand, within aroCat 1045.606 kb on - strand, within aroCat 1045.821 kb on + strand, within aroCat 1046.476 kb on + strand, within OKGIIK_04810at 1046.477 kb on - strand, within OKGIIK_04810at 1046.599 kb on - strand, within OKGIIK_04810at 1046.599 kb on - strand, within OKGIIK_04810at 1046.677 kb on + strand, within OKGIIK_04810at 1046.677 kb on + strand, within OKGIIK_04810at 1046.677 kb on + strand, within OKGIIK_04810at 1046.677 kb on + strand, within OKGIIK_04810at 1046.677 kb on + strand, within OKGIIK_04810at 1046.677 kb on + strand, within OKGIIK_04810at 1046.678 kb on - strand, within OKGIIK_04810at 1046.678 kb on - strand, within OKGIIK_04810at 1046.678 kb on - strand, within OKGIIK_04810at 1046.678 kb on - strand, within OKGIIK_04810at 1046.678 kb on - strand, within OKGIIK_04810at 1046.968 kb on + strand, within OKGIIK_04810at 1046.969 kb on - strand, within OKGIIK_04810at 1046.969 kb on - strand, within OKGIIK_04810at 1047.201 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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1,045,194 + aroC OKGIIK_04805 0.15 +0.3
1,045,362 + aroC OKGIIK_04805 0.30 -0.2
1,045,362 + aroC OKGIIK_04805 0.30 -0.4
1,045,362 + aroC OKGIIK_04805 0.30 +0.0
1,045,362 + aroC OKGIIK_04805 0.30 +0.3
1,045,363 - aroC OKGIIK_04805 0.30 +0.3
1,045,374 + aroC OKGIIK_04805 0.31 +0.3
1,045,374 + aroC OKGIIK_04805 0.31 +1.0
1,045,374 + aroC OKGIIK_04805 0.31 -0.8
1,045,375 - aroC OKGIIK_04805 0.31 -0.1
1,045,605 + aroC OKGIIK_04805 0.53 +1.5
1,045,605 + aroC OKGIIK_04805 0.53 -0.7
1,045,605 + aroC OKGIIK_04805 0.53 +0.3
1,045,606 - aroC OKGIIK_04805 0.53 -0.2
1,045,821 + aroC OKGIIK_04805 0.72 -1.2
1,046,476 + OKGIIK_04810 0.33 -0.7
1,046,477 - OKGIIK_04810 0.33 -0.2
1,046,599 - OKGIIK_04810 0.45 -0.7
1,046,599 - OKGIIK_04810 0.45 +1.5
1,046,677 + OKGIIK_04810 0.53 -2.2
1,046,677 + OKGIIK_04810 0.53 +1.3
1,046,677 + OKGIIK_04810 0.53 +0.0
1,046,677 + OKGIIK_04810 0.53 +0.0
1,046,677 + OKGIIK_04810 0.53 +0.2
1,046,677 + OKGIIK_04810 0.53 -0.2
1,046,678 - OKGIIK_04810 0.53 -1.9
1,046,678 - OKGIIK_04810 0.53 -1.8
1,046,678 - OKGIIK_04810 0.53 -0.6
1,046,678 - OKGIIK_04810 0.53 +1.0
1,046,678 - OKGIIK_04810 0.53 -0.7
1,046,968 + OKGIIK_04810 0.82 +0.3
1,046,969 - OKGIIK_04810 0.82 -0.5
1,046,969 - OKGIIK_04810 0.82 +0.9
1,047,201 + +1.3

Or see this region's nucleotide sequence