Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroC and OKGIIK_04810 are separated by 31 nucleotides OKGIIK_04810 and asd are separated by 35 nucleotides
OKGIIK_04805: aroC - chorismate synthase, at 1,045,032 to 1,046,120
aroC
OKGIIK_04810: OKGIIK_04810 - D-glycerate dehydrogenase, at 1,046,152 to 1,047,147
_04810
OKGIIK_04815: asd - aspartate-semialdehyde dehydrogenase, at 1,047,183 to 1,048,214
asd
Position (kb)
1046
1047
1048 Strain fitness (log2 ratio)
-2
-1
0
1 at 1045.194 kb on + strand, within aroC at 1045.362 kb on + strand, within aroC at 1045.362 kb on + strand, within aroC at 1045.362 kb on + strand, within aroC at 1045.362 kb on + strand, within aroC at 1045.363 kb on - strand, within aroC at 1045.374 kb on + strand, within aroC at 1045.374 kb on + strand, within aroC at 1045.374 kb on + strand, within aroC at 1045.375 kb on - strand, within aroC at 1045.605 kb on + strand, within aroC at 1045.605 kb on + strand, within aroC at 1045.605 kb on + strand, within aroC at 1045.606 kb on - strand, within aroC at 1045.821 kb on + strand, within aroC at 1046.476 kb on + strand, within OKGIIK_04810 at 1046.477 kb on - strand, within OKGIIK_04810 at 1046.599 kb on - strand, within OKGIIK_04810 at 1046.599 kb on - strand, within OKGIIK_04810 at 1046.677 kb on + strand, within OKGIIK_04810 at 1046.677 kb on + strand, within OKGIIK_04810 at 1046.677 kb on + strand, within OKGIIK_04810 at 1046.677 kb on + strand, within OKGIIK_04810 at 1046.677 kb on + strand, within OKGIIK_04810 at 1046.677 kb on + strand, within OKGIIK_04810 at 1046.678 kb on - strand, within OKGIIK_04810 at 1046.678 kb on - strand, within OKGIIK_04810 at 1046.678 kb on - strand, within OKGIIK_04810 at 1046.678 kb on - strand, within OKGIIK_04810 at 1046.678 kb on - strand, within OKGIIK_04810 at 1046.968 kb on + strand, within OKGIIK_04810 at 1046.969 kb on - strand, within OKGIIK_04810 at 1046.969 kb on - strand, within OKGIIK_04810 at 1047.201 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 1,045,194 + aroC OKGIIK_04805 0.15 +0.3 1,045,362 + aroC OKGIIK_04805 0.30 -0.2 1,045,362 + aroC OKGIIK_04805 0.30 -0.4 1,045,362 + aroC OKGIIK_04805 0.30 +0.0 1,045,362 + aroC OKGIIK_04805 0.30 +0.3 1,045,363 - aroC OKGIIK_04805 0.30 +0.3 1,045,374 + aroC OKGIIK_04805 0.31 +0.3 1,045,374 + aroC OKGIIK_04805 0.31 +1.0 1,045,374 + aroC OKGIIK_04805 0.31 -0.8 1,045,375 - aroC OKGIIK_04805 0.31 -0.1 1,045,605 + aroC OKGIIK_04805 0.53 +1.5 1,045,605 + aroC OKGIIK_04805 0.53 -0.7 1,045,605 + aroC OKGIIK_04805 0.53 +0.3 1,045,606 - aroC OKGIIK_04805 0.53 -0.2 1,045,821 + aroC OKGIIK_04805 0.72 -1.2 1,046,476 + OKGIIK_04810 0.33 -0.7 1,046,477 - OKGIIK_04810 0.33 -0.2 1,046,599 - OKGIIK_04810 0.45 -0.7 1,046,599 - OKGIIK_04810 0.45 +1.5 1,046,677 + OKGIIK_04810 0.53 -2.2 1,046,677 + OKGIIK_04810 0.53 +1.3 1,046,677 + OKGIIK_04810 0.53 +0.0 1,046,677 + OKGIIK_04810 0.53 +0.0 1,046,677 + OKGIIK_04810 0.53 +0.2 1,046,677 + OKGIIK_04810 0.53 -0.2 1,046,678 - OKGIIK_04810 0.53 -1.9 1,046,678 - OKGIIK_04810 0.53 -1.8 1,046,678 - OKGIIK_04810 0.53 -0.6 1,046,678 - OKGIIK_04810 0.53 +1.0 1,046,678 - OKGIIK_04810 0.53 -0.7 1,046,968 + OKGIIK_04810 0.82 +0.3 1,046,969 - OKGIIK_04810 0.82 -0.5 1,046,969 - OKGIIK_04810 0.82 +0.9 1,047,201 + +1.3
Or see this region's nucleotide sequence