Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_04765

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrimO and OKGIIK_04760 are separated by 94 nucleotidesOKGIIK_04760 and greB are separated by 48 nucleotidesgreB and OKGIIK_04770 overlap by 4 nucleotides OKGIIK_04755: rimO - 30S ribosomal protein S12 methylthiotransferase RimO, at 1,034,690 to 1,036,027 rimO OKGIIK_04760: OKGIIK_04760 - DUF3025 domain-containing protein, at 1,036,122 to 1,036,928 _04760 OKGIIK_04765: greB - transcription elongation factor GreB, at 1,036,977 to 1,037,483 greB OKGIIK_04770: OKGIIK_04770 - hypothetical protein, at 1,037,480 to 1,038,730 _04770 Position (kb) 1036 1037 1038Strain fitness (log2 ratio) -2 -1 0 1 2at 1036.209 kb on + strand, within OKGIIK_04760at 1036.210 kb on - strand, within OKGIIK_04760at 1036.210 kb on - strand, within OKGIIK_04760at 1036.332 kb on + strand, within OKGIIK_04760at 1036.333 kb on - strand, within OKGIIK_04760at 1036.333 kb on - strand, within OKGIIK_04760at 1036.333 kb on - strand, within OKGIIK_04760at 1036.333 kb on - strand, within OKGIIK_04760at 1036.333 kb on - strand, within OKGIIK_04760at 1036.503 kb on + strand, within OKGIIK_04760at 1036.503 kb on + strand, within OKGIIK_04760at 1036.504 kb on - strand, within OKGIIK_04760at 1036.504 kb on - strand, within OKGIIK_04760at 1036.504 kb on - strand, within OKGIIK_04760at 1036.696 kb on + strand, within OKGIIK_04760at 1036.696 kb on + strand, within OKGIIK_04760at 1036.696 kb on + strand, within OKGIIK_04760at 1036.696 kb on + strand, within OKGIIK_04760at 1036.696 kb on + strand, within OKGIIK_04760at 1036.697 kb on - strand, within OKGIIK_04760at 1036.697 kb on - strand, within OKGIIK_04760at 1036.697 kb on - strand, within OKGIIK_04760at 1036.697 kb on - strand, within OKGIIK_04760at 1036.884 kb on + strandat 1036.884 kb on + strandat 1036.885 kb on - strandat 1036.885 kb on - strandat 1036.990 kb on + strandat 1036.991 kb on - strandat 1036.991 kb on - strandat 1036.991 kb on - strandat 1036.991 kb on - strandat 1037.267 kb on - strand, within greBat 1037.308 kb on + strand, within greBat 1037.308 kb on + strand, within greBat 1037.308 kb on + strand, within greBat 1037.308 kb on + strand, within greBat 1037.309 kb on - strand, within greBat 1037.309 kb on - strand, within greBat 1037.309 kb on - strand, within greBat 1037.309 kb on - strand, within greBat 1037.314 kb on + strand, within greBat 1037.314 kb on + strand, within greBat 1037.314 kb on + strand, within greBat 1037.314 kb on + strand, within greBat 1037.314 kb on + strand, within greBat 1037.314 kb on + strand, within greBat 1037.315 kb on - strand, within greBat 1037.315 kb on - strand, within greBat 1037.315 kb on - strand, within greBat 1037.315 kb on - strand, within greBat 1037.315 kb on - strand, within greBat 1037.315 kb on - strand, within greBat 1037.631 kb on + strand, within OKGIIK_04770at 1037.631 kb on + strand, within OKGIIK_04770at 1037.904 kb on + strand, within OKGIIK_04770at 1037.904 kb on + strand, within OKGIIK_04770at 1037.905 kb on - strand, within OKGIIK_04770at 1037.905 kb on - strand, within OKGIIK_04770at 1037.905 kb on - strand, within OKGIIK_04770at 1038.135 kb on + strand, within OKGIIK_04770at 1038.135 kb on + strand, within OKGIIK_04770at 1038.135 kb on + strand, within OKGIIK_04770at 1038.135 kb on + strand, within OKGIIK_04770at 1038.135 kb on + strand, within OKGIIK_04770at 1038.135 kb on + strand, within OKGIIK_04770at 1038.135 kb on + strand, within OKGIIK_04770at 1038.135 kb on + strand, within OKGIIK_04770at 1038.135 kb on + strand, within OKGIIK_04770at 1038.135 kb on + strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.136 kb on - strand, within OKGIIK_04770at 1038.141 kb on + strand, within OKGIIK_04770at 1038.141 kb on + strand, within OKGIIK_04770at 1038.141 kb on + strand, within OKGIIK_04770at 1038.141 kb on + strand, within OKGIIK_04770at 1038.141 kb on + strand, within OKGIIK_04770at 1038.141 kb on + strand, within OKGIIK_04770at 1038.141 kb on + strand, within OKGIIK_04770at 1038.141 kb on + strand, within OKGIIK_04770at 1038.142 kb on - strand, within OKGIIK_04770at 1038.142 kb on - strand, within OKGIIK_04770at 1038.142 kb on - strand, within OKGIIK_04770at 1038.142 kb on - strand, within OKGIIK_04770at 1038.142 kb on - strand, within OKGIIK_04770at 1038.142 kb on - strand, within OKGIIK_04770at 1038.142 kb on - strand, within OKGIIK_04770at 1038.142 kb on - strand, within OKGIIK_04770at 1038.252 kb on + strand, within OKGIIK_04770at 1038.252 kb on + strand, within OKGIIK_04770at 1038.252 kb on + strand, within OKGIIK_04770at 1038.253 kb on - strand, within OKGIIK_04770at 1038.253 kb on - strand, within OKGIIK_04770at 1038.253 kb on - strand, within OKGIIK_04770at 1038.374 kb on + strand, within OKGIIK_04770

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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1,036,209 + OKGIIK_04760 0.11 -1.0
1,036,210 - OKGIIK_04760 0.11 -1.3
1,036,210 - OKGIIK_04760 0.11 -0.2
1,036,332 + OKGIIK_04760 0.26 -0.8
1,036,333 - OKGIIK_04760 0.26 -0.7
1,036,333 - OKGIIK_04760 0.26 -0.9
1,036,333 - OKGIIK_04760 0.26 -0.6
1,036,333 - OKGIIK_04760 0.26 +0.0
1,036,333 - OKGIIK_04760 0.26 +0.3
1,036,503 + OKGIIK_04760 0.47 +0.4
1,036,503 + OKGIIK_04760 0.47 +0.0
1,036,504 - OKGIIK_04760 0.47 +0.0
1,036,504 - OKGIIK_04760 0.47 -0.1
1,036,504 - OKGIIK_04760 0.47 -1.5
1,036,696 + OKGIIK_04760 0.71 -0.2
1,036,696 + OKGIIK_04760 0.71 +0.2
1,036,696 + OKGIIK_04760 0.71 +0.4
1,036,696 + OKGIIK_04760 0.71 -0.6
1,036,696 + OKGIIK_04760 0.71 -0.8
1,036,697 - OKGIIK_04760 0.71 +0.9
1,036,697 - OKGIIK_04760 0.71 +1.0
1,036,697 - OKGIIK_04760 0.71 -1.1
1,036,697 - OKGIIK_04760 0.71 +0.0
1,036,884 + +0.3
1,036,884 + +0.8
1,036,885 - -0.3
1,036,885 - +0.0
1,036,990 + +0.4
1,036,991 - -0.2
1,036,991 - -0.3
1,036,991 - +0.0
1,036,991 - -1.0
1,037,267 - greB OKGIIK_04765 0.57 -1.5
1,037,308 + greB OKGIIK_04765 0.65 +0.6
1,037,308 + greB OKGIIK_04765 0.65 +0.4
1,037,308 + greB OKGIIK_04765 0.65 -1.9
1,037,308 + greB OKGIIK_04765 0.65 -1.1
1,037,309 - greB OKGIIK_04765 0.65 -1.5
1,037,309 - greB OKGIIK_04765 0.65 +1.4
1,037,309 - greB OKGIIK_04765 0.65 +1.4
1,037,309 - greB OKGIIK_04765 0.65 +1.0
1,037,314 + greB OKGIIK_04765 0.66 -0.2
1,037,314 + greB OKGIIK_04765 0.66 -0.6
1,037,314 + greB OKGIIK_04765 0.66 +0.1
1,037,314 + greB OKGIIK_04765 0.66 +0.6
1,037,314 + greB OKGIIK_04765 0.66 +2.1
1,037,314 + greB OKGIIK_04765 0.66 +2.4
1,037,315 - greB OKGIIK_04765 0.67 +0.9
1,037,315 - greB OKGIIK_04765 0.67 -0.1
1,037,315 - greB OKGIIK_04765 0.67 -0.2
1,037,315 - greB OKGIIK_04765 0.67 +0.8
1,037,315 - greB OKGIIK_04765 0.67 -0.5
1,037,315 - greB OKGIIK_04765 0.67 +0.8
1,037,631 + OKGIIK_04770 0.12 +0.4
1,037,631 + OKGIIK_04770 0.12 +0.8
1,037,904 + OKGIIK_04770 0.34 +0.0
1,037,904 + OKGIIK_04770 0.34 -0.8
1,037,905 - OKGIIK_04770 0.34 +0.3
1,037,905 - OKGIIK_04770 0.34 +0.4
1,037,905 - OKGIIK_04770 0.34 +0.0
1,038,135 + OKGIIK_04770 0.52 +0.3
1,038,135 + OKGIIK_04770 0.52 +1.6
1,038,135 + OKGIIK_04770 0.52 +1.6
1,038,135 + OKGIIK_04770 0.52 -0.6
1,038,135 + OKGIIK_04770 0.52 +0.3
1,038,135 + OKGIIK_04770 0.52 +1.0
1,038,135 + OKGIIK_04770 0.52 +0.4
1,038,135 + OKGIIK_04770 0.52 +1.5
1,038,135 + OKGIIK_04770 0.52 +1.5
1,038,135 + OKGIIK_04770 0.52 +1.9
1,038,136 - OKGIIK_04770 0.52 +1.9
1,038,136 - OKGIIK_04770 0.52 +1.5
1,038,136 - OKGIIK_04770 0.52 +0.0
1,038,136 - OKGIIK_04770 0.52 -1.6
1,038,136 - OKGIIK_04770 0.52 +0.5
1,038,136 - OKGIIK_04770 0.52 -0.6
1,038,136 - OKGIIK_04770 0.52 +1.0
1,038,136 - OKGIIK_04770 0.52 +0.0
1,038,136 - OKGIIK_04770 0.52 +0.4
1,038,136 - OKGIIK_04770 0.52 -1.2
1,038,136 - OKGIIK_04770 0.52 -1.1
1,038,136 - OKGIIK_04770 0.52 +0.3
1,038,136 - OKGIIK_04770 0.52 +1.4
1,038,136 - OKGIIK_04770 0.52 +1.1
1,038,136 - OKGIIK_04770 0.52 +0.0
1,038,136 - OKGIIK_04770 0.52 +1.8
1,038,141 + OKGIIK_04770 0.53 +0.0
1,038,141 + OKGIIK_04770 0.53 -1.8
1,038,141 + OKGIIK_04770 0.53 -1.3
1,038,141 + OKGIIK_04770 0.53 +0.0
1,038,141 + OKGIIK_04770 0.53 -0.6
1,038,141 + OKGIIK_04770 0.53 -0.8
1,038,141 + OKGIIK_04770 0.53 +0.4
1,038,141 + OKGIIK_04770 0.53 +0.4
1,038,142 - OKGIIK_04770 0.53 +0.4
1,038,142 - OKGIIK_04770 0.53 +0.4
1,038,142 - OKGIIK_04770 0.53 -1.2
1,038,142 - OKGIIK_04770 0.53 +1.1
1,038,142 - OKGIIK_04770 0.53 -0.2
1,038,142 - OKGIIK_04770 0.53 -1.9
1,038,142 - OKGIIK_04770 0.53 +0.1
1,038,142 - OKGIIK_04770 0.53 -0.1
1,038,252 + OKGIIK_04770 0.62 -0.2
1,038,252 + OKGIIK_04770 0.62 +0.2
1,038,252 + OKGIIK_04770 0.62 +1.6
1,038,253 - OKGIIK_04770 0.62 +0.4
1,038,253 - OKGIIK_04770 0.62 -0.2
1,038,253 - OKGIIK_04770 0.62 +0.0
1,038,374 + OKGIIK_04770 0.71 -0.8

Or see this region's nucleotide sequence